Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g2092 ATGACTTCATCCAGCGGCGGCGTTCCTCCTGGGTTCCGGTTCCACCCGACGGACGAAGAGCTTCTGCACTACTACTTGAAGAAGAAGGTGTCCTATCAGAAGTTTGATATGGAGGTGATCAGAGAGGTTGATTTGAATAAGATGGAGCCATGGGAACTCCAAGAGAGATGTAGGATTGGGTCCACACCACAAAATGAGTGGTACTTCTTCAGCCACAAGGATAGGAAGTATCCAACAGGGTCAAGGACTAATAGAGCCACAAATGCAGGGTTTTGGAAGGCAACAGGGAGGGACAAATGCATAAGAAATAGCTTCAAGAAAATTGGAATGAGGAAAACCCTTGTTTTCTACAGAGGAAGGGCCCCTCATGGCCAAAAGACTGATTGGATCATGCATGAGTATAGGCTTGAAGATGCTGATGATTCTCCAGGAAACCCTAGTGAGGATGGATGGGTGGTGTGCAGGGTTTTCAAGAAGAAGAACCTATTCAAGCTTGGAACCGAAGGCGGAGGAAGCAGCAGCGCCAGCATGGCCGGCTTAGACCAACAACTCAACATTAACACATCATCCACCACCGACCATCCCCGATCCTTCACCCACAGAGACACCCAATACTTACCACGCCCACAATCCTTACCCTTCCACTACTCCCACATCCCCACCCCACAATACTCCCACAATCTCCAATCCCAAACCCTTCTCCCTCCCCACAAGCCCATTGCCTACGACTTTTCACCTCTCCCTTCCGACTCCCCCGTCATGATCAAGCAGCTCATGTCCAACCCCCGAGACTGCGAGAGTGCCGGCAGCGAGAGCCTCCGGTACCAGCCCTGCGAGCCGGGGATGGAGGTGAATACATGTGAGCCGGGGGCTCATCATCATCAGCATATGGTGGGTCCTGGGAGAGAAGAAAGCTTGAGTGAGTGGAGCATGCTTGATAGGTTGGTGACCTCTCATCTTAGCCATGAGGATTCATCGTCGAAGGGAGTGAGGTTTGAGGATGGGAATGGTTCGTCGGTTCAGCAAATGAATCAGCTGTCCTTGCGTGGAGAAATGGACTTCTGGGGGTATGGGAAGTAG 1080 0.5148 MTSSSGGVPPGFRFHPTDEELLHYYLKKKVSYQKFDMEVIREVDLNKMEPWELQERCRIGSTPQNEWYFFSHKDRKYPTGSRTNRATNAGFWKATGRDKCIRNSFKKIGMRKTLVFYRGRAPHGQKTDWIMHEYRLEDADDSPGNPSEDGWVVCRVFKKKNLFKLGTEGGGSSSASMAGLDQQLNINTSSTTDHPRSFTHRDTQYLPRPQSLPFHYSHIPTPQYSHNLQSQTLLPPHKPIAYDFSPLPSDSPVMIKQLMSNPRDCESAGSESLRYQPCEPGMEVNTCEPGAHHHQHMVGPGREESLSEWSMLDRLVTSHLSHEDSSSKGVRFEDGNGSSVQQMNQLSLRGEMDFWGYGK* 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g2092 359 MobiDBLite consensus disorder prediction 320 342 - -
Vvi18g2092 359 Pfam No apical meristem (NAM) protein 9 136 IPR003441 GO:0003677|GO:0006355
Vvi18g2092 359 SUPERFAMILY NAC domain 7 159 IPR036093 GO:0003677|GO:0006355
Vvi18g2092 359 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 7 249 - -
Vvi18g2092 359 Gene3D NAC domain 17 164 IPR036093 GO:0003677|GO:0006355
Vvi18g2092 359 FunFam NAC domain-containing protein 17 163 - -
Vvi18g2092 359 ProSiteProfiles NAC domain profile. 8 159 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g2092 Vvi-Chr18 29018757 29021753 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g2092 1 356 NAC Transcription Factor Family AT1G33280 54.865 7.04e-123 354
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vvi18g2092 NAM 6.9e-37 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g2092 - - vvi:100248262 751.125