Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g2086 ATGATTGTGAACGAGATCAGGCCATTCAAGAGGGCCAAGAGGAGAAGCACCTCAGATCTCTGCGATTTTCTCAGTTTTCCCTCCGTTTCCGGCGACGGGGACGGTGACTGCTTCGCCGAGCAGCCGTTTTGGTCAGCGGTACAGAGTTTCTTGAAGCAGTATGGGCATTCGAGGTTTCCGCCGTCTCTGTTTCCGTCGCTGGTGACGTGGCAGATATTGTTGCGAGTCGGTGATCCGGCAGATGGCGCCGGGGTTGTATCGCTTGATGTTGTTGAAGAAGACGTTGCCAGATCTAGATCTGTGTACTGCGATCAGTGCCGTGTTGTTGGTTGGAGTGGTCATCCAGTATGCCGAAAGCGATACCATTTCATAATAAGAGCGAATAGTAATCCTATAAAAGGATCCCACAGAGCATGCACGAAGTGTGGGAATATGACATATTTGTCTGATTCAAGGTGCAAGTTGTGCAACACTGCACTTACTGTAGATGAGCTTGAAGATTGGGTTTATCATCAATTTGAGGATACAACCCATCTGTTACATGGTGTAGTTCATTCAAATGGCTATGGTCACCTTCTTAGAGTCAATGGCAGAGAAGGCGGCGCTGACATTCTTTCTGGATTTGATATCATGAACTTCTGGGATAGGCTGTGTAAAAGGCTAGCTGTCAGGAAAGTAAGCGTGATGGACTTGTCAAAAAAATATGGAACCGAGTACCGCCTACTTCACACGGTTGCAAAAGGCCAAGTGTGGTACGGCCACTGGGGCTATCAATTTGGAACCGGGAGCTATGCTCTCACCTCAGACGCTTACCAGAATGCAATCCACACCCTCTCCAACATCCCCCTATCTACATTCTTTTTCCAAGGCCGAGGTCCCCGAACCCACCTCCAAACTCTAATCGCATTCTACCAGTCCTTAGCCGAAACCGAACTCCGAACATTGAAGGACCTCTTCTCCTTTTTGTTGAACCGCATCAGCGAACTCAATACAGCAAAATCTGAGGACCAAACATCGAGCCATTATCAGAACCTGCTATGTGCTTGGGCAAGGAATGATGTGGAAAGGGTGGAGCAGTGTATGGTTAAGGTGCTAGTAACGTCAGCCACTGCTGAAAAGGGCAAGTGGGTGAGTCGGCGCACTCTCAAGGGCGCTCTTTACAAGGCGGCCTCTCCAGAGCTCATCGATTACTGCCTTAAACATCTAGTTGGAAGGGTGACAGGCGATGGCATGGTAGTTCGCACCCGTTACAATCCTAATTCTAATGCGGTCGAGTTCAGGATTGAGCCACAGAGCTGCATAAACAACAGCATTAGGGTAGACAGCTTGGACTCGAACTCAAGCCTTCCATCCAAAGGGCAAGTTATTGATGATCTAAGATATTTATACAATTCCATACTCAACCCCCAGACCATGGTGACCTACAGACCTAAGGCGACAAGGGAATTGGCGGTTGAATCGGCTAAGAAGCTTCTAGACTGCAAGCAGTTCATTAAGGACTACAAGGTCGAACGAGTTGCAGTTAAAAACCCCTTTGCAATCCACCTCTGGTGTCACGTGGAGCTTGAAGATTACTCCCAAGATTACCCCTTCCCTCCTCCGGAACTTCTTGTACTACCAACAAACGCTACCATAACTGATCTAAAACGTGAAGCTACAAAAGCCTTTAAGGAAGTTTACGTTGTCTTTAAGAGGTTTTATATTCAAGAACTCCCTGACTTTGGCCGCATAGAAGGCAGTGTGACTTTGAACCTTTTGTTTGGATCAAGAGGGTCTGTCCGGATCCGAGGAAGATGCAATGCAAAATATGGCCTTGGCCGGTTCCAGGCAGAGAGGGGTACAGAGACCTGGATAGTTGACTGCATCTGTGGGACTAAGGATGATGACGGTGAAAGAATGTTGGCGTGTGACAAGTGCAGTGTATGGCAGCATACGAGGTGTGTAGGGATTGAGAATTCCGATGAAATCCCTGCAAAATTTCTATGCGAGAGATGTTTGGGCTCTTCTTGTGCAGAAACCAAGTGTTCCAGTGGAAGTAGTAGTCCTAGGGGGGAGGAGGTGGAGGCAGAGTATGAGTGTCTCATTGACGGGGTGGAATCCAGGATTTTGAAAAATGAGGCTAATACTATTTTACCATCTGGAAGAACTTGCAGAGATGAAATCAAAGCAAAGGGTCTAGGACTCGTATCCAGGATGTGTATGACATTTGGTGTTCAGTAA 2220 0.4757 MIVNEIRPFKRAKRRSTSDLCDFLSFPSVSGDGDGDCFAEQPFWSAVQSFLKQYGHSRFPPSLFPSLVTWQILLRVGDPADGAGVVSLDVVEEDVARSRSVYCDQCRVVGWSGHPVCRKRYHFIIRANSNPIKGSHRACTKCGNMTYLSDSRCKLCNTALTVDELEDWVYHQFEDTTHLLHGVVHSNGYGHLLRVNGREGGADILSGFDIMNFWDRLCKRLAVRKVSVMDLSKKYGTEYRLLHTVAKGQVWYGHWGYQFGTGSYALTSDAYQNAIHTLSNIPLSTFFFQGRGPRTHLQTLIAFYQSLAETELRTLKDLFSFLLNRISELNTAKSEDQTSSHYQNLLCAWARNDVERVEQCMVKVLVTSATAEKGKWVSRRTLKGALYKAASPELIDYCLKHLVGRVTGDGMVVRTRYNPNSNAVEFRIEPQSCINNSIRVDSLDSNSSLPSKGQVIDDLRYLYNSILNPQTMVTYRPKATRELAVESAKKLLDCKQFIKDYKVERVAVKNPFAIHLWCHVELEDYSQDYPFPPPELLVLPTNATITDLKREATKAFKEVYVVFKRFYIQELPDFGRIEGSVTLNLLFGSRGSVRIRGRCNAKYGLGRFQAERGTETWIVDCICGTKDDDGERMLACDKCSVWQHTRCVGIENSDEIPAKFLCERCLGSSCAETKCSSGSSSPRGEEVEAEYECLIDGVESRILKNEANTILPSGRTCRDEIKAKGLGLVSRMCMTFGVQ* 740
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g2086 739 PANTHER PHD FINGER PROTEIN MALE MEIOCYTE DEATH 1-RELATED 15 675 - -
Vvi18g2086 739 Pfam PHD-finger 621 666 IPR019787 -
Vvi18g2086 739 CDD PHD_MMD1_like 620 665 - -
Vvi18g2086 739 SMART PHD_3 620 666 IPR001965 -
Vvi18g2086 739 ProSiteProfiles Zinc finger PHD-type profile. 618 668 IPR019787 -
Vvi18g2086 739 ProSitePatterns Zinc finger PHD-type signature. 621 665 IPR019786 -
Vvi18g2086 739 SUPERFAMILY FYVE/PHD zinc finger 612 666 IPR011011 -
Vvi18g2086 739 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 606 671 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g2086 Vvi-Chr18 28932158 28939425 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g2086 86 665 PHD Transcription Factor Family AT5G22260 30.442 4.28e-89 292
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Vvi18g2086 PHD 1.1e-10 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g2086 - - vvi:100246638 1521.52