Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g2084 ATGTCTTCTTCACAGCCACGCCCCTCTCCTTCTTCTCAGCTCAAACCCAAACGCCAATCCGATTCTCCCTTTCGAGGTGTCCGGAAACGCAGCTGGGGCCGGTACGTTTCAGAAATTCGCCTTCCGGGTAAGAAGACCCGGGTCTGGCTGGGATCTTTCGGGTCGCCGGAGATGGCCGCTCGGGCCTACGACGCCGCTGCGTTCTTCCTCAGGGGCGACTCGGCCTGCCTCAACTTCCCCGAATCGGCCGAGTCGCTGCCCCGCCCAGAGTCGTCTTCTAGAAGGGACATCCAGGTGGCTGCTGCAAAGGCGGCAGCGGAAAACTCTGCTGCTGGAACGGATACCAGCGCTGGGGTTCGGGACCTGAGCTTGGAGGACTGGTGTGGGTTTGAGGTTGGTGATGAAACGACGCCATTTGGAGGGCCGGTACACAGTCCTCTCAGTTTTGAGTCGTTTGAGTGCTTGTTTGATGATGTAACGACGTCGTTTGGCGATGAAGTTACGTTTACTAACTACCCCTGGTAA 525 0.579 MSSSQPRPSPSSQLKPKRQSDSPFRGVRKRSWGRYVSEIRLPGKKTRVWLGSFGSPEMAARAYDAAAFFLRGDSACLNFPESAESLPRPESSSRRDIQVAAAKAAAENSAAGTDTSAGVRDLSLEDWCGFEVGDETTPFGGPVHSPLSFESFECLFDDVTTSFGDEVTFTNYPW* 175
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g2084 174 CDD AP2 24 82 IPR001471 GO:0003700|GO:0006355
Vvi18g2084 174 PRINTS Ethylene responsive element binding protein signature 24 35 IPR001471 GO:0003700|GO:0006355
Vvi18g2084 174 PRINTS Ethylene responsive element binding protein signature 62 82 IPR001471 GO:0003700|GO:0006355
Vvi18g2084 174 Gene3D AP2/ERF domain 23 82 IPR036955 GO:0003700|GO:0006355
Vvi18g2084 174 MobiDBLite consensus disorder prediction 1 27 - -
Vvi18g2084 174 PIRSF PTI6 2 172 IPR017392 GO:0003700
Vvi18g2084 174 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 5 109 - -
Vvi18g2084 174 SMART rav1_2 23 86 IPR001471 GO:0003700|GO:0006355
Vvi18g2084 174 FunFam Ethylene-responsive transcription factor 2 22 81 - -
Vvi18g2084 174 Pfam AP2 domain 24 72 IPR001471 GO:0003700|GO:0006355
Vvi18g2084 174 ProSiteProfiles AP2/ERF domain profile. 23 80 IPR001471 GO:0003700|GO:0006355
Vvi18g2084 174 SUPERFAMILY DNA-binding domain 23 82 IPR016177 GO:0003677
Vvi18g2084 174 MobiDBLite consensus disorder prediction 1 19 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g2084 Vvi-Chr18 28924147 28924671 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g2084 24 105 AP2-EREBP Transcription Factor Family AT5G25810 68.293 3.70e-33 115
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vvi18g2084 AP2 2.2e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g2084 K09286 - vvi:100263585 324.324