Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g2074 ATGACTCCAGCTAACTTAGCAGGCCAGTTCGGAGACACCACCTACACCAAAGTCTTTGTTGGTGGGTTGGCTTGGGAGACCCAGAAAGAGACCATGAAGAAATACTTTGAACAGTTTGGAGAGATCTTGGAGGCTGTTGTCATCACTGATAAAACCACTGGAAGATCCAAAGGCTATGGATTTGTCACTTTTCGTGAGCCAGATGCTGCCATGAGAGCTTGTGTTGATGCTGCTCCAGTCATAGACGGGAGGAGGGCCAACTGCAATTTAGCCTCTTTGGGTGTCCAAAGATCTAAGCCCTCTACTCCAAAACATGGTGGAGGCAGGAACTTTAGGGTAATGGGATCTTTTCAGACAGGGTTTCAAGGAGGGGTGGGCACAGCTTTTCCTTCAGCAGCAACCTTCCCTCATTATGCCATCCAACAAGGGATACCCTATAATCTTTATGGGTACTCTCCATACTCCCCAGACTACACATATCCTACGAGCTACTACAGTGTTTATGGAGGTGCAGCTGCCCAATATCCTGTGTATGGGGCAGGGCCAGGAGGGATGATGACCGGCGCAGGCGCAGCTTTTTACCCGTATCTTCAGTTCGGAGAAGGGAGCGGAGGAGCAGCGGCTAGTGGTGGCTACACGTCGGGACAGGGCTATGGAGTCCAGTACCCGCACCACCTTGTTCAGTACTCGGCCATCAACTCCACTGGAGGGTACCCTCAGCATTATGGTGCTCCCATGTCTCTTGCCCCTACCCCTGCGTTGCAATCAGTGTGTTTTGCTGTGCCACAGGCGTGA 795 0.517 MTPANLAGQFGDTTYTKVFVGGLAWETQKETMKKYFEQFGEILEAVVITDKTTGRSKGYGFVTFREPDAAMRACVDAAPVIDGRRANCNLASLGVQRSKPSTPKHGGGRNFRVMGSFQTGFQGGVGTAFPSAATFPHYAIQQGIPYNLYGYSPYSPDYTYPTSYYSVYGGAAAQYPVYGAGPGGMMTGAGAAFYPYLQFGEGSGGAAASGGYTSGQGYGVQYPHHLVQYSAINSTGGYPQHYGAPMSLAPTPALQSVCFAVPQA* 265
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g2074 264 SUPERFAMILY RNA-binding domain, RBD 12 120 IPR035979 GO:0003676
Vvi18g2074 264 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 18 73 IPR000504 GO:0003723
Vvi18g2074 264 Gene3D - 4 111 IPR012677 -
Vvi18g2074 264 SMART rrm1_1 17 89 IPR000504 GO:0003723
Vvi18g2074 264 FunFam RNA-binding (RRM/RBD/RNP motifs) family protein 10 97 - -
Vvi18g2074 264 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 16 100 IPR000504 GO:0003723
Vvi18g2074 264 PANTHER BOULE-RELATED 4 238 - -
Vvi18g2074 264 CDD RRM_RBM24_RBM38_like 16 91 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g2074 Vvi-Chr18 28764746 28768229 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g2074 1 92 C2H2 Transcription Factor Family AT2G19380 40.217 4.68e-14 69.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g2074 - - vvi:100241327 498.049