Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g2073 ATGGCGGCTTTAAATTATCAGCTCAATGGATCTAAATTAGGGACCGTCAATGATGCTTTATATAAGGAACTTTGGCATGCCTGTGCTGGGCCTCTGGTTAATGTACCTCGTGAACAGGAACGTGTTTATTACTTTCCTCAAGGCCATATGGAACAGCTTGAAGCATCGATGCATCAGGGGCTGGACCAGAAGATGCCTTCATTCAATTTACCATCTAAGATCCTATGCAAAGTAGTTAATGTTCACCTTCGGGCTGAACCTGAAACTGATGAAGTTTATGCACAAGTTACATTGTTGCCTGAACCAGATCAAAGTGAGATAACTTCTCCAGATCCTCCACTTCCTGAACCTCAAAGTTGCACTGTCCATTCATTTTGTAAGACACTTACCGCTTCCGACACAAGCACTCATGGGGGATTCTCTGTTCTTCGGAGGCACGCAGATGAATGCTTGCCACCATTGGATATGTCCCAGAATCCACCATGGCAAGAATTGGTTGCTAAAGATTTGCATGGAAATGAATGGCATTTTCGTCATATTTTTCGAGGTCAACCTAGACGTCATCTGCTCACAACTGGATGGAGTGTTTTTGTTAGTTCTAAGAGATTAGCAGCTGGCGATGCATTTATATTCCTTAGGCAAGTTACATTTTGTATAGGAGAAAATGGAGAATTGCGTGTTGGAGTTCGGAGGCTCATGAGACAACTGAACAATGTGCCACCATCTGTAATATCAAGTCACAGCATGCATCTTGGAGTCCTTGCTACTGCATCTCATGCCATCACTACTGGTACCCTATTTTCCGTCTTCTACAAACCAAGGGCAAGTCCATCCGAGTTTATCGTTAGTGTCAACAAGTACCTTGAAGCTCGAAACCACAAGGTTTCTGTGGGTATGAGATTTAAGATGAGATTTGAAGGTGATGAGGCTCCAGAAAGGAGGTTCAGTGGCACAATAGTCGGTGTTGGAGATACTGGATCATCAGGATGGACAGATTCTGAGTGGAGATCCTTAAAGGTTCAATGGGATGAGCCTTCTTCCATCTTGAGGCCAGAAAGGGTATCGCCATGGGAATTGGAGCCACTTGTGACAGAAACTCCTTTGACAGCTCAACCAATGCAAAGAAGCAAACGGCCACGATCACCAGTTTTATCTTCGCCAACCCCAGGCCTTTCAGCTTTTGCTGTGAAGACCAACTCTCATAGCTTTACTGTTAACTACTCAAGTACTGCTGTTTCCAACAATTCAGCATATTGGCCCCAACAATCCGAGCCTGTGCCTGAATTGTTTACCCCAGTTCCCAATAAAGAATATGGAAAAAAGAAACCAGAAAATGGCAATGGCTATAGGTTATTTGGGATTCAACTGGTTGACAATTCCAACGTGGAAGAAACTTTGCCTGTCACGACCATCTCTTCTGGTGCTGGCGAGGATCAGCCAGTTGTCTGTTTGGATGCTGACTCTGACCATCAATCTCAACGTTCAAATATTAATCAATCCAAAACTCCTACTGTTGGCAGCGATCCTGAGAAGTCATGCCTGGGATCTTCTCTACTGCAAAGTCGGCAAATACGAAGCTGCACTAAGGTTCACATGCAAGGCATGGCTGTTGGAAGGGCTGTGGATTTGACACAGTTTAGCAGCTACAAAGAGCTTCTCAGCAAACTCGAAGAGATGTTTGACATCAAAGGTGAGCTCTGCGGACCCACCAAAAAATGGCAGGTCGTCTACACTGATGATGAGGATGATATGATGATGGTTGGAGATGACCCTTGGCATGAGTTCTGCAGTATGGTAAGGAAGATCTTCATATACACAGTGGAGGAAGTCAAGGAACTGTCTCCAAAGGCGAAACTTCCACTCAAGGGAGAATTCAAACCAGGCAAGCCAGATTCTAAGACGACGATTGGCACTGAAGATCACTCGTCCATGGTGGGGTCTGGATTTTGA 1950 0.4482 MAALNYQLNGSKLGTVNDALYKELWHACAGPLVNVPREQERVYYFPQGHMEQLEASMHQGLDQKMPSFNLPSKILCKVVNVHLRAEPETDEVYAQVTLLPEPDQSEITSPDPPLPEPQSCTVHSFCKTLTASDTSTHGGFSVLRRHADECLPPLDMSQNPPWQELVAKDLHGNEWHFRHIFRGQPRRHLLTTGWSVFVSSKRLAAGDAFIFLRQVTFCIGENGELRVGVRRLMRQLNNVPPSVISSHSMHLGVLATASHAITTGTLFSVFYKPRASPSEFIVSVNKYLEARNHKVSVGMRFKMRFEGDEAPERRFSGTIVGVGDTGSSGWTDSEWRSLKVQWDEPSSILRPERVSPWELEPLVTETPLTAQPMQRSKRPRSPVLSSPTPGLSAFAVKTNSHSFTVNYSSTAVSNNSAYWPQQSEPVPELFTPVPNKEYGKKKPENGNGYRLFGIQLVDNSNVEETLPVTTISSGAGEDQPVVCLDADSDHQSQRSNINQSKTPTVGSDPEKSCLGSSLLQSRQIRSCTKVHMQGMAVGRAVDLTQFSSYKELLSKLEEMFDIKGELCGPTKKWQVVYTDDEDDMMMVGDDPWHEFCSMVRKIFIYTVEEVKELSPKAKLPLKGEFKPGKPDSKTTIGTEDHSSMVGSGF* 650
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g2073 649 FunFam Auxin response factor 123 233 - -
Vvi18g2073 649 Pfam B3 DNA binding domain 125 230 IPR003340 GO:0003677
Vvi18g2073 649 FunFam Auxin response factor 294 366 - -
Vvi18g2073 649 MobiDBLite consensus disorder prediction 367 388 - -
Vvi18g2073 649 Gene3D - 294 366 - -
Vvi18g2073 649 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 19 614 IPR044835 GO:0003677|GO:0006355|GO:0009725
Vvi18g2073 649 MobiDBLite consensus disorder prediction 621 636 - -
Vvi18g2073 649 SMART B3_2 125 233 IPR003340 GO:0003677
Vvi18g2073 649 Gene3D - 520 614 - -
Vvi18g2073 649 CDD B3_DNA 123 231 IPR003340 GO:0003677
Vvi18g2073 649 ProSiteProfiles PB1 domain profile. 525 618 IPR000270 GO:0005515
Vvi18g2073 649 MobiDBLite consensus disorder prediction 366 388 - -
Vvi18g2073 649 Pfam Auxin response factor 257 339 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Vvi18g2073 649 SUPERFAMILY DNA-binding pseudobarrel domain 114 260 IPR015300 -
Vvi18g2073 649 ProSiteProfiles B3 DNA-binding domain profile. 125 233 IPR003340 GO:0003677
Vvi18g2073 649 Pfam AUX/IAA family 494 615 IPR033389 -
Vvi18g2073 649 MobiDBLite consensus disorder prediction 621 649 - -
Vvi18g2073 649 FunFam Auxin response factor 520 614 - -
Vvi18g2073 649 SUPERFAMILY CAD & PB1 domains 528 602 - -
Vvi18g2073 649 Gene3D - 122 233 IPR015300 -
Vvi18g2073 649 MobiDBLite consensus disorder prediction 488 511 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g2073 Vvi-Chr18 28750309 28755668 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g2073 1 647 B3 DNA Binding Superfamily AT1G59750 67.166 0.0 874
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Vvi18g2073 AUX_IAA 3.1e-12 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g2073 K14486 - vvi:100263592 1305.81