LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vvi18g2072	ATGATGAAGCTCAAGCAGTTGTTACAGTCCAGGACCCATTTGTCTGAAAATCTTTTGCATGGGAAACCTGGTGATATTAGAAATCCTTCATGGTTGCATGCTTTTACATCTCGGGTTAGCCTTTCAACTGCCACAGACCATTTTGCTGATAAAGGAAATTACCCAGACCGAGTATATGCTCCTTATTGTGTTTACAAGGGCAAAGCTTCATTGACCGTGTACCCTGTTCTCCCAAAATTCTCTAGATTGGATTCTGGAGGTCTGAAAGTTGATCGCCATGGTGTCATGATGCTGCAATTCTCACCTGCTGTGGGTGAGCGCAAGTACGACTGGGAGAAGAAGCAGTTCTTTGCATTGTCAGCGGTAGAGGTTGGGTCTCTATTAAGTTTGAGTCCTGGAGGTGGTTGTGAATTTTTCCATGATCCTTCAATGAAAACAAGTAATGCTGGTCAAGTGAGGAAGAGCTTATCAGTTAAGTCTATGGATGGTGGTAGCTATTTTCTTTCTCTGTCTGTTGTGAACAATATTCAAAAAACCAATGAGCGCCTTGCTGTTCCTCTCACAGCTGCAGAATTTGCAGTGATGCAGACAGCTTGCAGTTTTGCTCTTCCCCACATTTTGGGATGGGATCGGTACATGAATCAAAAGCTACCAAGAACAGAAGCAACTCCATCAACTTTAGAATGGGACAGATGA	696	0.4339	MMKLKQLLQSRTHLSENLLHGKPGDIRNPSWLHAFTSRVSLSTATDHFADKGNYPDRVYAPYCVYKGKASLTVYPVLPKFSRLDSGGLKVDRHGVMMLQFSPAVGERKYDWEKKQFFALSAVEVGSLLSLSPGGGCEFFHDPSMKTSNAGQVRKSLSVKSMDGGSYFLSLSVVNNIQKTNERLAVPLTAAEFAVMQTACSFALPHILGWDRYMNQKLPRTEATPSTLEWDR*	232

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vvi18g2072	231	PANTHER	SINGLE-STRANDED DNA-BINDING PROTEIN WHY2, MITOCHONDRIAL	24	223	IPR013742	GO:0003697\|GO:0006355\|GO:0006952
	Vvi18g2072	231	SUPERFAMILY	ssDNA-binding transcriptional regulator domain	56	222	IPR009044	GO:0003677\|GO:0006355
	Vvi18g2072	231	Pfam	Whirly transcription factor	64	197	IPR013742	GO:0003697\|GO:0006355\|GO:0006952
	Vvi18g2072	231	Gene3D	Transcriptional Coactivator Pc4; Chain A	48	222	IPR009044	GO:0003677\|GO:0006355

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vvi18g2072	9	231	Whirly Transcription Factor Family	AT1G71260	52.521	1.59e-75	226

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Transcription factors information

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Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	Whirly	Vvi18g2072		Whirly	4.4e-55	CL0609

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vvi18g2072	-		-	vvi:100258449	462.225

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