Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g2072 ATGATGAAGCTCAAGCAGTTGTTACAGTCCAGGACCCATTTGTCTGAAAATCTTTTGCATGGGAAACCTGGTGATATTAGAAATCCTTCATGGTTGCATGCTTTTACATCTCGGGTTAGCCTTTCAACTGCCACAGACCATTTTGCTGATAAAGGAAATTACCCAGACCGAGTATATGCTCCTTATTGTGTTTACAAGGGCAAAGCTTCATTGACCGTGTACCCTGTTCTCCCAAAATTCTCTAGATTGGATTCTGGAGGTCTGAAAGTTGATCGCCATGGTGTCATGATGCTGCAATTCTCACCTGCTGTGGGTGAGCGCAAGTACGACTGGGAGAAGAAGCAGTTCTTTGCATTGTCAGCGGTAGAGGTTGGGTCTCTATTAAGTTTGAGTCCTGGAGGTGGTTGTGAATTTTTCCATGATCCTTCAATGAAAACAAGTAATGCTGGTCAAGTGAGGAAGAGCTTATCAGTTAAGTCTATGGATGGTGGTAGCTATTTTCTTTCTCTGTCTGTTGTGAACAATATTCAAAAAACCAATGAGCGCCTTGCTGTTCCTCTCACAGCTGCAGAATTTGCAGTGATGCAGACAGCTTGCAGTTTTGCTCTTCCCCACATTTTGGGATGGGATCGGTACATGAATCAAAAGCTACCAAGAACAGAAGCAACTCCATCAACTTTAGAATGGGACAGATGA 696 0.4339 MMKLKQLLQSRTHLSENLLHGKPGDIRNPSWLHAFTSRVSLSTATDHFADKGNYPDRVYAPYCVYKGKASLTVYPVLPKFSRLDSGGLKVDRHGVMMLQFSPAVGERKYDWEKKQFFALSAVEVGSLLSLSPGGGCEFFHDPSMKTSNAGQVRKSLSVKSMDGGSYFLSLSVVNNIQKTNERLAVPLTAAEFAVMQTACSFALPHILGWDRYMNQKLPRTEATPSTLEWDR* 232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g2072 231 PANTHER SINGLE-STRANDED DNA-BINDING PROTEIN WHY2, MITOCHONDRIAL 24 223 IPR013742 GO:0003697|GO:0006355|GO:0006952
Vvi18g2072 231 SUPERFAMILY ssDNA-binding transcriptional regulator domain 56 222 IPR009044 GO:0003677|GO:0006355
Vvi18g2072 231 Pfam Whirly transcription factor 64 197 IPR013742 GO:0003697|GO:0006355|GO:0006952
Vvi18g2072 231 Gene3D Transcriptional Coactivator Pc4; Chain A 48 222 IPR009044 GO:0003677|GO:0006355
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g2072 9 231 Whirly Transcription Factor Family AT1G71260 52.521 1.59e-75 226
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Whirly Vvi18g2072 Whirly 4.4e-55 CL0609
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g2072 - - vvi:100258449 462.225