Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g2068 ATGTCTTATAGCTATTCAGACCCACCAAGCTGCTGCTCAGCTTCTGCTGAATTGAAGCTCTACCAGGCCTTCATCTTCTCTGTTCCAATCTTCTTCACCTTCATTCTCCTTTTGTTGTTCTACCTCTTCTATCTTCGCCGTCGGAGGGTCGATTGGGCTTCGCTTCGGATGCGATCTTCTATGCAGAACGATGCCGATCATGCTTCTGGAGTGTCTGAATTGGGCTTGAAGAAAGAAGTGAGAGAGATGCTTCCCATTATTGTATTCAAGGAAAGCTTCTCTGTCAGTGATACACAGTGCTCAGTATGCCTGGCTGATTATCAAGCAGAGGACAGGCTCCAACAGATACCTGCATGTGGGCACACATTTCATATGGACTGCATCGACCACTGGCTCGCCACCCACACCACCTGCCCACTCTGCCGCCTTTCCCTCACTGCAGCTGCCAGAACTCCGGCTGAACCGCTCACTATCCTAGTAGAAACACCTCATGGAACTTCCCCAGAACAAACACAGCCTGATACACAAGTCTCCCAGCCCAGGAATGAAAATGAAAGAGCTGTTCATACCACCACCATGGAAGCAGAGGGAGGAAGCTCTGAATGTGATGACTGTGAGACTGGAACCAGAGATGCAAGGAATGAGAATGAGAGGCATGAAGTGTAG 666 0.494 MSYSYSDPPSCCSASAELKLYQAFIFSVPIFFTFILLLLFYLFYLRRRRVDWASLRMRSSMQNDADHASGVSELGLKKEVREMLPIIVFKESFSVSDTQCSVCLADYQAEDRLQQIPACGHTFHMDCIDHWLATHTTCPLCRLSLTAAARTPAEPLTILVETPHGTSPEQTQPDTQVSQPRNENERAVHTTTMEAEGGSSECDDCETGTRDARNENERHEV* 222
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g2068 221 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 61 148 IPR013083 -
Vvi18g2068 221 SUPERFAMILY RING/U-box 84 152 - -
Vvi18g2068 221 SMART ring_2 100 141 IPR001841 -
Vvi18g2068 221 Coils Coil 209 221 - -
Vvi18g2068 221 MobiDBLite consensus disorder prediction 163 186 - -
Vvi18g2068 221 MobiDBLite consensus disorder prediction 203 221 - -
Vvi18g2068 221 CDD RING-H2_EL5-like 99 142 - -
Vvi18g2068 221 ProSiteProfiles Zinc finger RING-type profile. 100 142 IPR001841 -
Vvi18g2068 221 PANTHER RING-H2 FINGER PROTEIN ATL16 17 191 IPR044600 GO:0016567|GO:0016740
Vvi18g2068 221 Pfam Ring finger domain 99 142 IPR001841 -
Vvi18g2068 221 MobiDBLite consensus disorder prediction 163 221 - -
Vvi18g2068 221 FunFam RING-H2 finger protein ATL7 66 147 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g2068 Vvi-Chr18 28686408 28689328 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g2068 4 221 C3H Transcription Factor Family AT4G10150 46.473 1.71e-66 203
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g2068 K19039 - vvi:100251770 422.165