Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g2061 ATGCAGCCAGTTTTAAGAGTTAGCGGACAAATTTTCAAACCTAAAGTGGGTCAAGAGCCGAATCTGTGGAATTTAGTTGTTGATGTGATGCACAAGGCTAACTATGCAAGCCGAATTTGTCATTTATGCAGACCTAATTGTGAAGCCAAAGTTACTGCCATAGAAGGTCAGTACCAGATTGGAATCTACACTGTACATCAAATTCAATATGGTGAGGAGATCACCTTTGATTATAACTCAGTCACAGAGAGTAAGGAAGAATACGAGGTTTCTATTTGTTTATGTGGCAGTCAGGTTTGTCGAATGAGCTATTTGAATCTAATAGGTGAAGGGATATTTCAAAAGGTATTGAAAGGGTGTCATGGAATTCTAGATCGGTATCAATTGATGTTGGAGGCTGTTGAAGTAGCAGGTGAATATTTAGAGACACACGAACCTATGACAATTCAGTCACTTATGCTAAATGAGATATCAAATGTGCATGATGGCATGGAAATTAGTGATGGAATTGGCACTTCTAGCGAACAGGTGGAAAGAATGCCAGAATTGGTCACCTTATCTACAGGCTTGCATGATGATCAGCAATGCCCGGGCAGTCTTGAAATGTTTGCAAATCTGCACAGTTCACCAATTGAGCCTAGGAATTCTGATATATCTTCAAGAATGGATGATGAGTCCAATAATAGTGGGATGCTCGCAGCTACTAACATCCGCCCTGGGCGAGATTCATGGAGAAATTTGGAAGTTGAAGACGGGGAATTGCCACAAGTGCAAAATGGTACATTGCAGCAGAGCAGCTCTGTTGATGCAAAATTAATCAAAGAGGGTGCAATTAGCTCAGTAGATAACGAAAGAAGGCAAGCTCTACAGACGACACAAGTGGTTATGAACATGTTTGATGCGACTATGCCTGGTACTCTAACAGAAGAACATAAGAAGAAGGTCCTGGCTGCCGTAGGCCAAGGAGAAACAGTTATGTAA 981 0.4128 MQPVLRVSGQIFKPKVGQEPNLWNLVVDVMHKANYASRICHLCRPNCEAKVTAIEGQYQIGIYTVHQIQYGEEITFDYNSVTESKEEYEVSICLCGSQVCRMSYLNLIGEGIFQKVLKGCHGILDRYQLMLEAVEVAGEYLETHEPMTIQSLMLNEISNVHDGMEISDGIGTSSEQVERMPELVTLSTGLHDDQQCPGSLEMFANLHSSPIEPRNSDISSRMDDESNNSGMLAATNIRPGRDSWRNLEVEDGELPQVQNGTLQQSSSVDAKLIKEGAISSVDNERRQALQTTQVVMNMFDATMPGTLTEEHKKKVLAAVGQGETVM* 327
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g2061 326 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE ATXR3 25 135 - -
Vvi18g2061 326 MobiDBLite consensus disorder prediction 209 236 - -
Vvi18g2061 326 SUPERFAMILY SET domain 23 101 IPR046341 -
Vvi18g2061 326 SMART set_7 7 85 IPR001214 GO:0005515
Vvi18g2061 326 Pfam Protein SET DOMAIN GROUP 2 C-terminal 91 136 IPR045606 -
Vvi18g2061 326 Gene3D SET domain 11 106 IPR046341 -
Vvi18g2061 326 MobiDBLite consensus disorder prediction 209 234 - -
Vvi18g2061 326 Pfam SET domain 30 79 IPR001214 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g2061 Vvi-Chr18 28551071 28552051 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g2061 228 326 Miscellaneous Gene Families AT2G03140 37.374 4.46e-11 62.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Vvi18g2061 SET 4.1e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g2061 K22748 - vvi:100263702 207.608