Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g2048 ATGGCTTCTAGCAGCTCCTTGAAAGCGTCGTCTTCCACTTCTAATTGTGATGGTTATAATTATCATGTGTTCTTGAGTTTTAGAGGTGAAGACACCCGCCAGACTTTCACTGGTCATCTTTATGCTAAGTTGGTTGCACGTGGAATTCACACCTTCAGAGATGATGAAGAACTTGAGAAAGGAGGAGATATCGCATCAGATCTCTCGAGAGCTATCGAAGAATCAAAGATTTTTATTATTATTTTCTCAAAACGCTATGCTGACTCCAAGTGGTGTTTGAATGAACTCGCAAAGATCATGGACTGTAAGAAAGAAAAGGGATCTGTGGTTGTGCCGGTTTTCTACCATGTGGAGCCAACAGATGTACGAAATCAAGGAGGAAGTTTTGAAGATGCATTTTTGGAGCATGCAAAAGATGCAGATCAAGAGAAGAAGAAGACAATAGAAACGTGGAAGAATGCCTTGAAGACAGCAGCCAACCTATCTGGATATCATCTGCAAAATCAATCTGAGGCAGAGTTTATTCAAGGGATTTTTGAAGATATCGTTATAAGATTGAATCGTACGCCTTTAGATATGGGCTGCAACATAGTTGGAATGGACTTTCATTTGAAGGTGTTAAAATCACTTATAAAAGTTGAGTTGGATGAGGTTCTCATGGTTGGTATCTATGGGATTGGTGGAATTGGCAAAACTACCATCTCTAAGGCTATTTATAATGATATCTCATCTCAATTTGATGGTAGTAGCTTTCTTGGAAATGTTGGGGGGAAATGTGAAGATGGTCTACTTAAATTACAAAAGACACTTCTTCAAGATATCTTAAAGTGTAAAGCGCCAAAATTCAACAATAGTAGCCAAGGAATCAATGTGATAAAGGAAAGGCTTCGATTGAAAAGAGTCCTTATTGTTCTTGATGATGTGGACAACTACATGCAATTAGAAAAATTGGCCGGAAAACATGGTTGGTATGGTGCAAAAAGTATAATCATCATAACAACTAAAGATAAACATTTGTTAGATCAACATGGAGTAAAAGCACTTTATGAGGTGCAAAAGTTGAATCATGAAAAATCTGTTGAACTTTTTAATTTGTGGGCCTTCGAGCAAAATACTCCCAAAATTGGATTTGAAAGCCTTTCAAATAGTGTAGTGGAGTATACTCATGGCCTTCCAATAGCACTTAAAGTTTTGGGTGGCTTTCTCCGTGAGAAGTCAAAAAATGAATGGGAAAGTGAATTGCATAAACTAAAAAAAATACCTGACGGGGAAGTCCAAAGTGTGCTTAAATTAGATATGCATGATTTAGTACAACAAATGGGTCAAGAAATTGTTCATCAAGAATGTCTTAAAGAGCCTGGAAACAGGAGTAGACTCTGGGATCCTGATGATGTTGTTAGTGTGTTAACAAGAAATATGGGGACTCGAGCAATTGAAGGAATATTTGTACCACTTTCTCTCGCAAGTCAGATATCTACAAATTCTTTCACAAAAATGAATAGACTTAGATTGCTAAAAGTCTATTCTTCAAGGTTTTGGATGATAGATTTTGAGAAGATCTTCCCCAAGGACCTCCAGAATCTTGATTTTCCTTATTTTGAGTTAAGATATTTCCATTTTAAGGGATACCCATTCGAATCCTTGCCAACAAATTTTCATGCAAAGAATCTTGTTGAACTTAATTTAAAGCATAGCAGCATAAAACAACTTTGGCAAGGGAATGAGGTATTATTATAA 1737 0.3673 MASSSSLKASSSTSNCDGYNYHVFLSFRGEDTRQTFTGHLYAKLVARGIHTFRDDEELEKGGDIASDLSRAIEESKIFIIIFSKRYADSKWCLNELAKIMDCKKEKGSVVVPVFYHVEPTDVRNQGGSFEDAFLEHAKDADQEKKKTIETWKNALKTAANLSGYHLQNQSEAEFIQGIFEDIVIRLNRTPLDMGCNIVGMDFHLKVLKSLIKVELDEVLMVGIYGIGGIGKTTISKAIYNDISSQFDGSSFLGNVGGKCEDGLLKLQKTLLQDILKCKAPKFNNSSQGINVIKERLRLKRVLIVLDDVDNYMQLEKLAGKHGWYGAKSIIIITTKDKHLLDQHGVKALYEVQKLNHEKSVELFNLWAFEQNTPKIGFESLSNSVVEYTHGLPIALKVLGGFLREKSKNEWESELHKLKKIPDGEVQSVLKLDMHDLVQQMGQEIVHQECLKEPGNRSRLWDPDDVVSVLTRNMGTRAIEGIFVPLSLASQISTNSFTKMNRLRLLKVYSSRFWMIDFEKIFPKDLQNLDFPYFELRYFHFKGYPFESLPTNFHAKNLVELNLKHSSIKQLWQGNEVLL* 579
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g2048 578 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 185 436 IPR027417 -
Vvi18g2048 578 ProSiteProfiles TIR domain profile. 19 186 IPR000157 GO:0007165
Vvi18g2048 578 Pfam TIR domain 20 187 IPR000157 GO:0007165
Vvi18g2048 578 Gene3D Ribonuclease Inhibitor 480 575 IPR032675 -
Vvi18g2048 578 SMART till_3 20 161 IPR000157 GO:0007165
Vvi18g2048 578 Gene3D - 191 348 IPR027417 -
Vvi18g2048 578 Gene3D - 353 444 IPR042197 -
Vvi18g2048 578 SUPERFAMILY L domain-like 447 571 - -
Vvi18g2048 578 Pfam Leucine Rich Repeat 556 574 IPR011713 -
Vvi18g2048 578 Pfam NB-ARC domain 205 433 IPR002182 GO:0043531
Vvi18g2048 578 SUPERFAMILY Toll/Interleukin receptor TIR domain 11 164 IPR035897 -
Vvi18g2048 578 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 21 570 IPR044974 GO:0006952
Vvi18g2048 578 PRINTS Disease resistance protein signature 295 309 - -
Vvi18g2048 578 PRINTS Disease resistance protein signature 388 402 - -
Vvi18g2048 578 PRINTS Disease resistance protein signature 552 568 - -
Vvi18g2048 578 PRINTS Disease resistance protein signature 220 235 - -
Vvi18g2048 578 FunFam Disease resistance protein (TIR-NBS-LRR class) 18 188 - -
Vvi18g2048 578 Gene3D - 15 190 IPR035897 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g2048 Vvi-Chr18 28430031 28435243 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g2048 20 576 WRKY Transcription Factor Family AT4G12020 29.126 6.78e-66 231
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g2048 - - vri:117907700 874.004