Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g2044 ATGGGTTGGGAAATTGTTCGTGAAAAATATCCTAGAGATCCTAACAAGTGGAGCAGATTGTGGGAGCCTGAGGATATCTATCGAGCATTTATAAGGAAGCAGGGAATGGAAAACGTTGAGGCAATATTTATGGACTTGTCTAGAATGAAGGAAATACAATTCAATTCACAAGTTTGGGCAGAGATGATGAAACTTAGGTTGCTCCAAATCATTTGTAATGATGATGAAGAGTTTATGAAAATGGAGTCTAAGGTGCATTTTCCTGAAGACTTTGAATTTCCTTCATATGAGTTAAGTTATCTTCTTTGGGAAAGATATCCTTTGAAATCATTGCCCTCAAATTTTTATGGCGAGAACCTGATTGAAATCAACTTGAAGAAGAGCAACATAAGACAACTTTGGCAAGGGAATAAGTGTCTTGGAAAGTTGAAGGTCTTAAATTTACAGGGATCTACGCAGCTTGACCATATATCAAATTTCTCAACTATGCCAAATCTAGAGAGACTAAATCTTAGACTTTGTGGAAGTCTGGACAAGATTGACTCATCTATTGGAGTCTTGACAAAGCTTACTTGGTTGGATTTGAGTAATTGCAAACTGCTTAAGAGTTTGCCAAGTAGCATTCAGTACTTGGACTCCCTTGAAGAACTGTATTTACGTAATTGCTCGAGCTTGGAGAAATTTCTGGAGATGGAAAGAGGTTGTATGAAAGGTTTAAGGGAGCTTTGGTTAGATAATACTGCTATTGAAGAATTATCCTCCTCAATAGTTCACATCACTTCACTTGAGTTATTATCTTTGAGAATATGCAAAAACCTGAAGAGTCTTCCAAGCAACATTTGTGGGTTGGAGTCCCTTACAACACTCGATCTCAGAGATTGTTCCAACCTGGAGACATTTCCGGAAATCATGGAGGACATGCAACATTTAGAAAGTCTTAATCTACGTGGAACGGGTATAAAACAGATAGCAGCACCATTTGAACATCTGAATCAGCTACTTTTTTTTTCATTGTGTTTCTGCAAAAACCTGAGGAGTCTTCCAAGCAACATTTGTAGGTTGGAGTCCCTTACAACACTCGATCTCAATCATTGCTCAAACCTGGAGACATTTCCGGAAATCATGGAGGACATGCAAGAGTTGAAAAACCTTGATTTACGTGGAACGGCTATAAAAGAGTTACCATCATCCGTTCAACGAATAAAGCGTCTTAGATATTTGGATTTGAGTAATTGCAAGAACCTTGAGACTCTTCCACACACCATTTATGATTTGGAATTTCTTGTAGATCTGACTGCCCATGGCTGTCCAAAACTGAAGAAGTTTCCTAGGAACATGGGGAATCTGAAAGGCTTACGCTCCTTAGAAAACCTAGATTTGAGTTATTGCGATGGGATGGAAGGAGCAATCTTCAGTGATATCGGTCAATTTTATAAGCTGAGAGAGCTTAATATCAGCCACTGCAAGTTGCTTCAAGAAATTCCGGAGTTTCCATCAACTTTACGAGAAATTGATGCTCATGATTGCACGGCCTTGGAAACTTTGTTTAGTCCATCAAGTCCACTCTGGTCTTCTTTCCTCAAATTGTTGAAATCAGCTACTCAGGATTCAGAATGTGACACACAAACGGGAATCAGTAAAATTAATATTCCAGGAAGTAGCGGAATTCCAAGGTGGGTATCCTATCAGAAAATGGGGAACCATATAAGAATACGGCTTCCTATGAATTTGTACGAGGATAACAACTTCTTCGGATTTGCTTTCTTCTATCTTTATCAGAAAGTAAATGGTTCTGAGAAACATTTTGAGGATGATTTTCCTTTACTCTACTCTTGGAAATTGCTTGGTGGCTCGTCTGATAAAGGGGATTCTTCCTTCTTTATTAACTATGACCCATGTGAATGCTACAAGAGTAATGGTGGTGTGTCAGATCGATTGTGGGTGGTGTATTACCCTAAGGTTGCTGTTCTAGATGAGCATGACTCCAATCAACGCAGAAGCCTTGAAATTTCATTTGATAGTCATCAAGCAACTTGCGTCAACATCAAAGGAGTTGGGATACATCTTGTATACATCCAAGATCATCAACAAAACCATGCTGCGCTAGACTTACTGGATGCTCAAGGAAATTTGGATGTCCAATACCCAACATTCCAAGATGATGAACACAACCATATTCCTATGCCTTTGGATCTTAGGAATTTTGGTGATGATGGATCAATACCATCAGAGGATACTAATTAA 2244 0.3886 MGWEIVREKYPRDPNKWSRLWEPEDIYRAFIRKQGMENVEAIFMDLSRMKEIQFNSQVWAEMMKLRLLQIICNDDEEFMKMESKVHFPEDFEFPSYELSYLLWERYPLKSLPSNFYGENLIEINLKKSNIRQLWQGNKCLGKLKVLNLQGSTQLDHISNFSTMPNLERLNLRLCGSLDKIDSSIGVLTKLTWLDLSNCKLLKSLPSSIQYLDSLEELYLRNCSSLEKFLEMERGCMKGLRELWLDNTAIEELSSSIVHITSLELLSLRICKNLKSLPSNICGLESLTTLDLRDCSNLETFPEIMEDMQHLESLNLRGTGIKQIAAPFEHLNQLLFFSLCFCKNLRSLPSNICRLESLTTLDLNHCSNLETFPEIMEDMQELKNLDLRGTAIKELPSSVQRIKRLRYLDLSNCKNLETLPHTIYDLEFLVDLTAHGCPKLKKFPRNMGNLKGLRSLENLDLSYCDGMEGAIFSDIGQFYKLRELNISHCKLLQEIPEFPSTLREIDAHDCTALETLFSPSSPLWSSFLKLLKSATQDSECDTQTGISKINIPGSSGIPRWVSYQKMGNHIRIRLPMNLYEDNNFFGFAFFYLYQKVNGSEKHFEDDFPLLYSWKLLGGSSDKGDSSFFINYDPCECYKSNGGVSDRLWVVYYPKVAVLDEHDSNQRRSLEISFDSHQATCVNIKGVGIHLVYIQDHQQNHAALDLLDAQGNLDVQYPTFQDDEHNHIPMPLDLRNFGDDGSIPSEDTN* 748
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g2044 747 SUPERFAMILY RNI-like 327 516 - -
Vvi18g2044 747 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 57 87 228 - -
Vvi18g2044 747 Pfam Leucine Rich Repeat 479 496 IPR001611 GO:0005515
Vvi18g2044 747 Pfam Leucine Rich Repeat 189 210 IPR001611 GO:0005515
Vvi18g2044 747 Gene3D Ribonuclease Inhibitor 422 529 IPR032675 -
Vvi18g2044 747 Pfam Leucine rich repeat 356 413 IPR001611 GO:0005515
Vvi18g2044 747 Pfam C-JID domain 554 695 IPR045344 -
Vvi18g2044 747 Gene3D Ribonuclease Inhibitor 43 231 IPR032675 -
Vvi18g2044 747 Gene3D Ribonuclease Inhibitor 232 421 IPR032675 -
Vvi18g2044 747 SUPERFAMILY L domain-like 45 388 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g2044 Vvi-Chr18 28343799 28346395 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g2044 283 464 WRKY Transcription Factor Family AT4G12020 35.519 4.72e-18 87.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g2044 - - vvi:100855123 1124.77