Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g2018 ATGTCTGCAAAATCTGGTTGCTCTGTTTACATTGGTAATTTGGATGAGAGGGTAAGCGACAGGGTTTTGTATGATATTCTGATTCAGGCAGGGCGGGTGGTGGACTTGTACATTCCTCGTGACAAAGAAACTGACCGGCCCAAAGGTTTTGCCTTTGCTGAATATGAGACCGAGGAAATTGCAGATTATGCTGTCAAGCTATTCTCTGGCCTTGTGACACTGTACAATCGAACACTGAAATTTGCGATTTCTGGGCAAGATAAGCCCTCGTCAGCAGCAATCACTCCCACATCAAATTCGTCCCTTGAACCAAAACCTCATCCTGTACCATTTAACAATATGGAAAATTCTCAACACTCCATGGGGTTAAGAACGCCTTGCAGATTAGCAGCTCACCCAGTAAATTATGCACAAGGACTCGAGCGCCGGCCAGTTTGTTGTCCCAGCTGA 450 0.4578 MSAKSGCSVYIGNLDERVSDRVLYDILIQAGRVVDLYIPRDKETDRPKGFAFAEYETEEIADYAVKLFSGLVTLYNRTLKFAISGQDKPSSAAITPTSNSSLEPKPHPVPFNNMENSQHSMGLRTPCRLAAHPVNYAQGLERRPVCCPS* 150
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g2018 149 PANTHER RNA BINDING MOTIF RBM PROTEIN -RELATED 1 130 - -
Vvi18g2018 149 Gene3D - 1 93 IPR012677 -
Vvi18g2018 149 MobiDBLite consensus disorder prediction 87 117 - -
Vvi18g2018 149 SMART rrm1_1 8 82 IPR000504 GO:0003723
Vvi18g2018 149 SUPERFAMILY RNA-binding domain, RBD 4 80 IPR035979 GO:0003676
Vvi18g2018 149 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 7 86 IPR000504 GO:0003723
Vvi18g2018 149 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 9 80 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g2018 Vvi-Chr18 27954479 27964861 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g2018 7 87 Eukaryotic Initiation Factors Gene Family AT1G49760 32.099 4.15e-08 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g2018 K12831 - vvi:100244774 280.411