Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g2009 ATGCAAGGAGTAGTCCTGAGTGATATTTGCGGCTTGTACTCCTTGCAAGTGTTAGATCTATCTGTCTGCTGTATAGATGAAGGAGGAATCCCCACTGAATTTTGCCAGCTATCATCTCTGCAAGAATTACTTCTAATCGGGAATCCTTTTAGGAGCATACCTGCTGGGATCAATCAACTTTCTAGGCTGAGACTCCTTGATTTGGGTTACTGTGAAGAGCTTCGACAAATTCCAGCGCTTCCATCCAGTTTGCGTGTCTTAGATGTACATGGGTGCAAACGGCTGGAAACTTCTTCAGGTCTACTCTGGTCTTCTCTATTCAACTGCTTCAAATCATTGATTCAGGATTTGGAATGCGAGATTTATCCTACAGAAAAATCTTTTGCCCAAGTAAATCTTATTTCAGACGGTAGTGGAATTCCAAATTGGATAAGCCATCACAAAAAGGGAGCTGAAGTAGTAGCAAAGCTTCCTCAAAATTGGTATAAAAATGACGACTTGTTGGGTTTTGTTTTGTACTGTGTCTATTATCCACTTGATAATGAATCTGAGGAGACACTGGATAATGATGCAACTTACTTCGAGTATGGTTTGACTTTGCGTGGTCGTGAAATTCAGTTTGTGGATGAACTCCAGTTTTTTCCCTCATTTCAATGCTATGTTGTACCACAAATGTGGATGATTTATTATCCTAAGCTTTTGATTGAGAAGAAGTACCACTCAAATAAATGCAGGGAGTTGACGGCTTCATTTTGTGGCTACTTGAGAGGTAAAGCAGTGAAAGTAGAAGAGTGTGGGATCCATCTTATATATGCCCATGATCATGAACAGAACCATGGTAAAGCAATGATATCCACCGTTTGCCGGGAATGTCAAGGGGATGTGCAATCCCGACGAAAGCTTTGTTTAAAGGGAAATGCCATCAATGAACTACCCACTATTGAGTGTCCCTTAGAACTTGATAGCTTATGTTTGCGGGAATGCAAAAACCTTGAGCATCTTCCCAGTAGCATATGTGAGTTGAAATCCCTTACAACTCTCTTCTGCTCAGGCTGTTCACGATTAAGGAGCTTTCCGGAAATCGTTGAGGATGTGGAAAATTTAAGAGTGCTTCATTTAGATGGAACTGCTATAGAAGAACTACCAGCATCAATTCAATATTTAAGAGGGCTTCAATATTTGAATCTTTCAGATTGCACCAACCTTGTGAGTCTTCCAGAAAGCATTTGTAATTTGAGTTCTCTCAAAACTCTAGATGTCAGTTTCTGTACAAAACTTGAGAAATTTCCTGAGAACCTGAGGAGTTTGCAATGTTTAGAGGATTTGCGTGCTTCAGGTCTAAATCTAAGCATGGACTGTTTTAGTAGCATACTTGCAGGCATCATTCAACTGTCTAAACTGAGAGTCCTTCAATTGAGTCACTGCCAGGGGCGTCGACAAGTTCCAGAGCTTCGGCCAAGTTTACGATATTTAGATGTCCACAGTTGCACATGCTTGGAAACTTCATCAAGTCCATCAAGTGAACTTGGTTTTTCTCTGTTCAAATGCTTCAAATCAATGATTGAGGAATTTGAATGCGACTCCTATTGGAACAAGGCAATCAGAGTTGTTATTTTGGGAAATAATGGAATTCCAGAGTGGATAAGCCAGCCAAAAAAAGGATCTCAAATAACAATAGAGCTTCCTATGGATTGGTACAGAAAAGATGACTTCTTAGGATTTGCTTTATACTCTATTTTTATTTCTATGGCTTGTGATGAGTTGAATTGCGAACTCAGTATCTGTGGTGATCAATCTGAATGCTGTCACGTGGATGATGTCCAGTTTTATTGCTGCCCAATTTGCGATGAATCAAGTCAAATGTGTGTGACTTATTATCCCAAGGTTGCTATTGACAAGCAGTATTGGTCAAACGAATGGAGACGTTTGAAGGCTTCATTTCATAGCTTGGATGCACCAGTCGAAGTGAAAGAGTGTGGGTACTATCTTATATATACACGTGATGTTATCAACAGCAACATCCCAGAAGATACCAGTACTGATTGTCAGAGAAGCTGTGACAACACAGAAGCCACCAAGCGCGACCATCAGACAATGATGGAGTATAGTGATGAGCAGAGAAGTTGTGATACCAGATCAGCAGCAGAAGATACTAATTCTAATGCACAAACAAGCTATGACTGGACACAGTGCACTGAGCATAGCGATTCTCCCATGGATACAACGACACAGATTATTAACAGTAATGTTGTTGATGCCCAAGATGATGAAGAGGATCATATGCACGACTGGTTGGAGCTTCTTTGCAAATTTGTTGGATGGATATGCTGCAGAAGATGCTAA 2343 0.405 MQGVVLSDICGLYSLQVLDLSVCCIDEGGIPTEFCQLSSLQELLLIGNPFRSIPAGINQLSRLRLLDLGYCEELRQIPALPSSLRVLDVHGCKRLETSSGLLWSSLFNCFKSLIQDLECEIYPTEKSFAQVNLISDGSGIPNWISHHKKGAEVVAKLPQNWYKNDDLLGFVLYCVYYPLDNESEETLDNDATYFEYGLTLRGREIQFVDELQFFPSFQCYVVPQMWMIYYPKLLIEKKYHSNKCRELTASFCGYLRGKAVKVEECGIHLIYAHDHEQNHGKAMISTVCRECQGDVQSRRKLCLKGNAINELPTIECPLELDSLCLRECKNLEHLPSSICELKSLTTLFCSGCSRLRSFPEIVEDVENLRVLHLDGTAIEELPASIQYLRGLQYLNLSDCTNLVSLPESICNLSSLKTLDVSFCTKLEKFPENLRSLQCLEDLRASGLNLSMDCFSSILAGIIQLSKLRVLQLSHCQGRRQVPELRPSLRYLDVHSCTCLETSSSPSSELGFSLFKCFKSMIEEFECDSYWNKAIRVVILGNNGIPEWISQPKKGSQITIELPMDWYRKDDFLGFALYSIFISMACDELNCELSICGDQSECCHVDDVQFYCCPICDESSQMCVTYYPKVAIDKQYWSNEWRRLKASFHSLDAPVEVKECGYYLIYTRDVINSNIPEDTSTDCQRSCDNTEATKRDHQTMMEYSDEQRSCDTRSAAEDTNSNAQTSYDWTQCTEHSDSPMDTTTQIINSNVVDAQDDEEDHMHDWLELLCKFVGWICCRRC* 781
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g2009 780 SUPERFAMILY L domain-like 4 453 - -
Vvi18g2009 780 PANTHER LEUCINE-RICH REPEAT-CONTAINING 350 514 - -
Vvi18g2009 780 Pfam C-JID domain 542 669 IPR045344 -
Vvi18g2009 780 Pfam C-JID domain 137 275 IPR045344 -
Vvi18g2009 780 SMART LRR_typ_2 37 60 IPR003591 -
Vvi18g2009 780 SMART LRR_typ_2 388 412 IPR003591 -
Vvi18g2009 780 SMART LRR_typ_2 365 387 IPR003591 -
Vvi18g2009 780 Gene3D Ribonuclease Inhibitor 240 550 IPR032675 -
Vvi18g2009 780 Gene3D Ribonuclease Inhibitor 3 122 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g2009 Vvi-Chr18 27859844 27862326 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g2009 323 445 WRKY Transcription Factor Family AT4G12020 43.089 1.72e-19 92.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g2009 - - vvi:104877471 1603.96