Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g2007 ATGGCCTCTTCTTCTTCCACTTCCCATTCTCAATGGAGTTACGATGTGTTTTTGAGTTTTAGAGGTGAAGATACTCGCAGAAACTTCACTGATCATCTCTACAAGGCTTTGATTCATAGCGGTATTAGAACCTTTAGAGATGATGAAGAACTTCGAAGGGGTGAAGAGATTGCACCAGAGCTCTTAAAAGCTATTGAGGAATCAAGGAGTGCCATTGTTGTCTTCTCAGAAACCTATGCTCGTTCCAAATGGTGTCTGGAAGAGCTTGTCAAGATCATGAAATGCAAAGAGGAAAGGGAACAAATGGTAGTTATCCCAATTTTCTATCATGTGGATCCGTCTGAAGTGCGGAACCAAACTGAGATTTACGGAGAAGCATTTACCCATCATGAGAAGAATGCAGAGGAGGAGAGAAAGGAAAAGATAAGGAAATGGAAGACTGCCCTGAGGCAAGCAAGCAATCTAGCCGGATATGATGCGACGAACAGGTACGAATCAGAGCTTATTGATGAAATTATTGAGAACGTCCTTAGAAGCTTCCCTAAGACTTTAGTTGTTAACGAGAACATTGTTGGAATGGATTCTCGTTTGGAAAGACTAATATCATTGTTAAAGATTGAGTTGAATGATGTTCGCATGGTCGGGGTTTATGGGCTTGGTGGTATCGGCAAGACCACCATCATCAATGCTCTTTATAACCGAATCTCAAATCAATTCGAAAGTGTTAGCTTGCTCACAGATGTCAGAAAAGAATCCACAGAAAATTCTGGTCTTCTTAAGTTACAACAACAACTTCTTAATGATACTCTAAGGACAACGAGGAAAATAGTTTTAAGGGATGTTCATGAAGGTATCAAAGAAATAAGGGACAAGCTTTCCTCAAAAAAGGTTCTTGTTTTTCTGGATGATGTAGATGAGCTGACACAATTAGAACACTTAATTGGAAAGCATGATTGGTTTGGTCCAGGAAGCAGAATCATCATTACTACTAGGAAAAAAGATTTGCTAACTAGGCATGAAGTAAATGATATGTATGAAGTTGAGAAATTATATTTTCACGAAGCTCTTCAACTTTTTTGCCGTTATGCCTTTAAACAACATCATCCGAAGGAAGGTTATGGAGATCTCTCTCATCAAGTAGTACAATATGCTGATGGTCTTCCATTAGCACTTAAAGTTTTGGGTTCTCTATTATTTGGAAAGAGACTACCAGATTGGAAAAGTGAATTGCAGAAGCTGGAAAAGGTGCCTAACATGGAAATTGTAAAAGTGCTTAAAATAAGTTTCGATGGATTGGATTATACACAAAGGATGATATTTCTCGACATTGCATGTTTCTTTAGAGGAGATGATGTGAAAAGAGTTTCAAGAATATTGGATGCTTCCGAATTCAATGCGGAAAGTGGAATAAATGCTCTCGTTGATAGGTGTTTCATAACCATTTCAAAGGACAACAGAATAGATATGCATGATTTGTTAGCCCAAATGGGCAAGGGCATTGTTGATCAAGAATGTCCTAATGAGCCAGGAGAGAGGAGCAGATTATGGAGACATATAGATATTTATCGAGTATTAAAAAGAAATACGGGGACTGAAAAAATCGAAGGGATATATCTTCATGTGGACAAATCAGAACAAATACAGTTTACATCCAAAGCTTTCGAAAGGATGCATAGACTTAGATTGCTTTCCATCTCCCACAATCACGTACAACTCTCTAAAGATTTTGTATTTCCGTATGACTTGACATACCTTAGATGGAATGGATATTCTTTAGAATCTCTACCATCAAACTTTCATGCGAACAATCTTGTTTCCCTCATATTGGGCAATAGTAACATAAAACTACTTTGGAAAGGAAACATGTGTCTTAGAAATTTAAGGCGCATCAATCTCAGCGATTCACAACAACTCATTGAGCTACCAAATTTCTCAAACGTGCCAAATTTGGAGGAACTAATTCTTTCAGGGTGTGTAAGCCTTGAGAGTCTTCCTGGGGACATTCATGAGTCGAAACACCTTTTAACTCTTCATTGCACTGGCTGTTCAAAACTAGCTAGTTTTCCAAAAATCAAGAGCAATATTGCAAAACTAGAGGAGCTTTGTTTAGATGAAACAGCTATAAAAGAGCTACCATCATCGATTGAACTTCTAGAAGGCCTTCGCTACTTGAATTTGGATAATTGTAAAAACCTTGAGGGTCTCCCGAACAGCATTTGTAATTTGAGATTTCTTGTTGTTCTAAGTCTTGAAGGCTGCTCAAAACTTGACAGATTGCCGGAGGACTTGGAGAGAATGCCATGTCTAGAGGTTCTTTATTTAAATTCGCTTAGTTGTCAATTGCCTTCTCTGTCAGGTTTATCTCTCTTAAGGGAACTATATTTAGATCAATGCAATCTAACACCAGGAGTAATAAAGAGTGATAACTGCTTGAACGCATTGAAAGAATTTAGTCTAGGAAATTGCATTCTAAATGGAGGAGTGTTCCATTGTATTTTCCATCTATCCTCACTGGAAGTATTAAATCTAAGTCGGTGCAGTCCAGAGGAAGGAGGAACCCTCAGTGACATACTTGTGGGTATCAGTCAACTCTCTAACCTTAGAGCCCTTGACTTGAGTCACTGCAAGAAGCTTTCACAAATTCCAGAGCTTCCTTCAAGTCTGCGACTGTTAGATTGTCACAGCTCAATTGGGATCTCATTGCCACCTATGCATTCTCTGGTGAATTGCCTCAAATCAGCAAGTCAGGTATGA 2754 0.3863 MASSSSTSHSQWSYDVFLSFRGEDTRRNFTDHLYKALIHSGIRTFRDDEELRRGEEIAPELLKAIEESRSAIVVFSETYARSKWCLEELVKIMKCKEEREQMVVIPIFYHVDPSEVRNQTEIYGEAFTHHEKNAEEERKEKIRKWKTALRQASNLAGYDATNRYESELIDEIIENVLRSFPKTLVVNENIVGMDSRLERLISLLKIELNDVRMVGVYGLGGIGKTTIINALYNRISNQFESVSLLTDVRKESTENSGLLKLQQQLLNDTLRTTRKIVLRDVHEGIKEIRDKLSSKKVLVFLDDVDELTQLEHLIGKHDWFGPGSRIIITTRKKDLLTRHEVNDMYEVEKLYFHEALQLFCRYAFKQHHPKEGYGDLSHQVVQYADGLPLALKVLGSLLFGKRLPDWKSELQKLEKVPNMEIVKVLKISFDGLDYTQRMIFLDIACFFRGDDVKRVSRILDASEFNAESGINALVDRCFITISKDNRIDMHDLLAQMGKGIVDQECPNEPGERSRLWRHIDIYRVLKRNTGTEKIEGIYLHVDKSEQIQFTSKAFERMHRLRLLSISHNHVQLSKDFVFPYDLTYLRWNGYSLESLPSNFHANNLVSLILGNSNIKLLWKGNMCLRNLRRINLSDSQQLIELPNFSNVPNLEELILSGCVSLESLPGDIHESKHLLTLHCTGCSKLASFPKIKSNIAKLEELCLDETAIKELPSSIELLEGLRYLNLDNCKNLEGLPNSICNLRFLVVLSLEGCSKLDRLPEDLERMPCLEVLYLNSLSCQLPSLSGLSLLRELYLDQCNLTPGVIKSDNCLNALKEFSLGNCILNGGVFHCIFHLSSLEVLNLSRCSPEEGGTLSDILVGISQLSNLRALDLSHCKKLSQIPELPSSLRLLDCHSSIGISLPPMHSLVNCLKSASQV* 918
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g2007 917 Pfam NB-ARC domain 197 417 IPR002182 GO:0043531
Vvi18g2007 917 CDD Ras_like_GTPase 215 359 - -
Vvi18g2007 917 Pfam TIR domain 14 176 IPR000157 GO:0007165
Vvi18g2007 917 PRINTS Disease resistance protein signature 291 305 - -
Vvi18g2007 917 PRINTS Disease resistance protein signature 862 878 - -
Vvi18g2007 917 PRINTS Disease resistance protein signature 384 398 - -
Vvi18g2007 917 PRINTS Disease resistance protein signature 213 228 - -
Vvi18g2007 917 SMART till_3 13 155 IPR000157 GO:0007165
Vvi18g2007 917 Gene3D - 181 345 IPR027417 -
Vvi18g2007 917 SUPERFAMILY L domain-like 489 891 - -
Vvi18g2007 917 FunFam Disease resistance protein (TIR-NBS-LRR class) 10 182 - -
Vvi18g2007 917 SUPERFAMILY Toll/Interleukin receptor TIR domain 3 158 IPR035897 -
Vvi18g2007 917 Gene3D - 350 433 IPR042197 -
Vvi18g2007 917 ProSiteProfiles Leucine-rich repeat profile. 866 888 IPR001611 GO:0005515
Vvi18g2007 917 ProSiteProfiles TIR domain profile. 12 180 IPR000157 GO:0007165
Vvi18g2007 917 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 14 737 IPR044974 GO:0006952
Vvi18g2007 917 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 182 443 IPR027417 -
Vvi18g2007 917 Gene3D Ribonuclease Inhibitor 537 693 IPR032675 -
Vvi18g2007 917 Gene3D Ribonuclease Inhibitor 694 897 IPR032675 -
Vvi18g2007 917 Gene3D - 6 180 IPR035897 -
Vvi18g2007 917 FunFam Disease resistance protein (TIR-NBS-LRR class) 352 433 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g2007 Vvi-Chr18 27781640 27785596 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g2007 10 793 WRKY Transcription Factor Family AT4G12020 33.816 1.78e-118 395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g2007 - - vvi:100261885 1786.16