Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g2006 ATGGGCCTTCCTCAGAATTGTTATGAAAATGATGACTTCTTGGGAATTGCTATATGCTCTGTTTATGCTCCAATCTATGAATGTGAGGACACACCTGAAAATTATTTTGCACATACATTGGAGAATCCATCTGGTGACGAAGTCCTAAATGAAGATGATGATTTACTTGAAGCTGAATCTTCAATCTCCACTAAGTTACAATGTCAACTGTCATTGAGTGAAGGATATGGATCTTCTTCCCTGTGTGTGCGACATCTCAGTTTTTGCTCTACTTGTAAATGCTACCATAATGGAGGTGTATCAGGACAAATGTGGGTGATATTCTATCCCAAGGCTGCTATTCTGGAGAGCTGTCACACCAATCGATTCATGCATCTTAATGCTGTATTTATAGACTCTCGCAATCATTTTAAGGTGCTCAAGTGTGGGCTCCAACCTATATACTCCCAAGACCCAATAGTACAGACTGAGGATGTGGATGCTAGCTGCTTGGAATGTCAGAGGAACGTGGAACACCGAAAGCTTTGTTTAAAGGGTCAGCCAATCAGCCTACTACCCATTGAGCATGCCTCTGAATTTGATACCTTATGTTTGCGAGAGTGCAAAAACCTTGAGAGTCTGCCAACAAGCATTTGGGAGTTCAAATCCCTAAAATCTCTCTTTTGCTCTCACTGTTCACAATTACAGTACTTTCCAGAAATCTTGGAGAATATGGAAAACTTAAGGGAGCTTCACTTGAATGAAACGGCTATAAAAGAGCTACCATCATCAATCGAACATTTGAATAGGCTTGAAGTTTTGAATCTGGAGGGCTGCAAAAAACTTGTGACTCTTCCAGAAAGCATTTGTAATTTATGCTTTCTTGAAGTTCTCGATGTCAGTTACTGTTCAAAACTCCACAAATTGCCACAAAACCTGGGGAGGCTGCAAAGCTTGAAGCATCTCTGTGCTTGTGGCTTAAATTCAACATGTTGCCAATTGGTTTCTTTGTTGGGTTTATGCTCCTTAAAGAATTTAATTCTACCTGGGTCAAAGCTAATGCAAGGAGTAGTCCTGAGTGATATTTGCTGCTTGTACTCGTTGGAAGTGTTAGATCTATCTTTCTGCAGAATAGATGAAGGAGGAATCCCCACTGAAATTTGCCACCTATCATCTCTGCAACATTTACATCTAAGTGGGAATCTTTTTAGGAGCATACCTTCTGGGGTCAATCAACTTTCTATGCTGAGAATCCTTAACTTGGGTCACTGTCAAGAGCTTCGACAAATTCCAGCGCTTCCATCCAGTTTGCGTGTCTTAGATGTACATGAGTGCCCATGGCTGGAAACTTCTTCGGGTCTACTCTGGTCTTCTCTATTCAACTGCTTCAAATCATTGATTCAGGATTTTGAATGCAGGATTTATCCTAGAGACAGCCTTTTTGCCCGAGTAAATCTTATTATTTCAGGAAGTTGTGGAATTCCAAAATGGATAAGCCATCACAAAAAGGGAGCTAAAGTGGTAGCAAAGCTTCCTGAAAATTGGTATAAAAATAACGACTTGTTGGGTTTTGTTTTGTACTCTCTTTATGATCCACTTGATAATGAATCTGAGGAGACACTGGAGAATGATGCAGCTTACCTCAAGTGTTCTTTGACTTTGCGTGCTCATGAATCTCAGTTTGTGGATGAACTCCAGTTTTATCCATCGTTTCGCTGCTATGATGTTGTACCAAAAATGTGGATGATTTATTATGCAAAGGTGGTGATTGAGAAGAAGTATCACTCAAATAAATGGAGGCAGTTGACGGCTTCATTTTGTGGCTTCTCACATGGTAAAGCAATGAAAGTGGAAGAGTGTGGGATCCATCTTATATATGCCCATGATCATGAAAAGAACAATGGTAAAGCAATGATACCCACCATTTGCCGGAAATGTCAAGCGGATGTGCAATCCCGACGGAAGCTTTGTTTAAAGGGAAGTGCCATCAATGAACTACCCACTATTGAGTGTCCCTTAGAATTTGATAGCTTATGTTTGCGAGAATGCAAAAACCTTGAGCGTCTTCCCAGTAGCATTTGTGAGTTGAAATCCCTTACAACTCTCAACTGCTCAGGCTGTTCACGATTAAGGAGCTTTCCAGAAATCCTTGAGGATGTGGAAAATTTAAGAAATCTTCATTTAGATGGAACTGCTATAAAAGAACTACCAGCATCAATTCAATATTTAAGAGGGCTTCAATGTTTGAATCTTGCAGATTGCACCAACCTTGTGAGTCTTCCAGAGACCATTTGTAATTTGAGTTCTCTTAAAATTCTAGATGTCAGTTTCTGTACAAAACTTGAGGAATTTCCCAAGAACCTGAGGAGTTTGCAATGTTTAGAGTGTTTGCATGCTTCAGGTCTAAATCTAAGCATGGACTGTTTTAGTAGCATACTTGCAGGCATCATTCAACTTTCTAAACTGAGAGTCGTTGAATTGAGTCACTGCCAGGGGCCTCTACAAGTTCCAGAGCTTACGCCAAGTTTACGAGTTCTAGATGTCCACAGTTGCACATGCTTGGAAACTTTATCAAGTCCATCAAGTCTACTTGGTGTTTCTCTGTTCAAATGCTTTAAATCAACAATTGAGGATTTGAAACACGAGAAGAGTTCAAATGGAGTATTTCTCCCTAATTCCGACTACATTGGCGATGGAATCTGTATTGTTGTTCCGGGAAGCAGTGGAATTCCCAAGTGGATAAGGAATCAGAGAGAGGGATATCGAATCACAATGGAGCTTCCTCAGAATTGTTATGAAAATGATGACTTCTTGGGGATTGCTATATGCTGTGTTTATGCTCCACTCGATGAATGTGAGGATATACCAGAAAATGATTTTGCACATACATTGGAGAATGAATCTGATGATTTACTTGAAGCTGAATCTTCAATCTCCACTGAGTTACAATGTCAACTGTCATTGAGTGAAGGATATGGATCTTCTTCCCTGTGTGTGCGACATCTCAGTTTTCGCTCTACTTGTAAATGCTACCATAATGGAGGTGTATCAGAACAAATGTGGGTGATATTCTATCCCAAGGCTGCTATTCTGGAGAGCGGTCCCACCAATCCATTCATGTATCTTGCGGCTACATTTAAGGACCCTCAGAGTCATTTTAAGGTGCTCAAGTGTGGGCTCCAACCTATATACTCCCAAGATCCAATAGTAGTACAGACTGAGGATGTGGATGCTAGATGCTTGGATTGTCAGAGGAACGTGGAACACCGAAAGCTTTGTTTAAAGGGTCAGACAATCAGCCTACTACCCATTGAGCATGCCTCTGAATTTGATACCTTATGTTTGCGAGAGTGCAAAAACCTTGAGAGTCTGCCAACAAGCATTTGGGAGTTCAAATCCCTAAAATCTCTCTTTTGCTCTCACTGTTCACAATTACAGTACTTTCCAGAAATCTTGGAGAATATGGAAAACTTAAGGGAGCTTCACTTGAACGAAACGGCTATAAAAGAGCTACCATCATCAATCGAACATTTGAATAGGCTTGAAGTTTTGAATCTGGACCGCTGCGAAAACCTTGTGACTCTTCCAGAAAGCATTTGTAATTTATGCTTTCTTGAAGTTCTCAATGTCAGTTACTGTTCAAAACTCCACAAATTGCCACAAAACCTAGGGAGGCTGCAAAGCTTGAAGCATCTCCGTGCTTGTGGCTTAAATTCAACATGTTGCCAATTGCTTTCTTTGTCGGGTTTATGCTCCTTAAAGAATTTAATTCTAACTGGGTCAAAGCTAATACAAGGAGAAATCCTGAGTGATATTTGCTGCTTGTACTCGTTGGAAGTGTTAGATCTATCTTTCTGCAGTATAGATGAAGGAGGAATCCCCACTGAAATTTGCCACCTATCATCTCTGCGACAATTACTTCTAACCGGGAATCTTTTTAGGAGCATACCTTCTGGGGTCAATCAACTTTCTATGCTGAGACTCCTTGACTTGGGTCACTGTCAAGAGCTTCGACAAATTCCAGCGCTTCCATCCAGTTTGCGTGTCTTAGATGTACATGAGTGCACACGGCTGGAAACTTCTTCCGGTCTACTCTGGTCTTCTCTATTCAACTGCTTCAAATCATTGATTCAGGATTTTGAATGCAGGATTTATCCTAGAGAAAACCGTTTTGCCCGAGTACATCTTATTATTTCAGGAAGTTGTGGAATTCCAAAATGGATAAGCCATCACAAAAAGGGAGCTAAAGTGGTAGCAGAGCTTCCTGAAAATTGGTATAAAAATAACGACTTGTTGGGTTTTGTTTTGTACTCTCTCTATGATCCACTTGATAATGAATCTGAGGAGACACTGGAGAATTATGCAACTTCCCTCAAGTGTGGTTTGACTTTGCGTGCTCATGAATCTCAGTTTGTGGATGAACTCCGGTTTTATCCCACGTTTCACTGCTATGATGTTGTACCAAATATGTGGATGATTTATTATCCCAAGGTGGAGATTGAGAAGTATCACTCAAATAAACGGAGGTGGAGGCAGTTGACCGCTTCATTTTGTGGCTTCTTATGTGGTAAAGCAATGAAAGTGGAAGAGTGTGGGATCCATCTTATATATGCCCATGATCATGAAAAGAACAATGGTAAAGCAATGATACCCACCATTTGCCAGGAATGTTAA 4653 0.406 MGLPQNCYENDDFLGIAICSVYAPIYECEDTPENYFAHTLENPSGDEVLNEDDDLLEAESSISTKLQCQLSLSEGYGSSSLCVRHLSFCSTCKCYHNGGVSGQMWVIFYPKAAILESCHTNRFMHLNAVFIDSRNHFKVLKCGLQPIYSQDPIVQTEDVDASCLECQRNVEHRKLCLKGQPISLLPIEHASEFDTLCLRECKNLESLPTSIWEFKSLKSLFCSHCSQLQYFPEILENMENLRELHLNETAIKELPSSIEHLNRLEVLNLEGCKKLVTLPESICNLCFLEVLDVSYCSKLHKLPQNLGRLQSLKHLCACGLNSTCCQLVSLLGLCSLKNLILPGSKLMQGVVLSDICCLYSLEVLDLSFCRIDEGGIPTEICHLSSLQHLHLSGNLFRSIPSGVNQLSMLRILNLGHCQELRQIPALPSSLRVLDVHECPWLETSSGLLWSSLFNCFKSLIQDFECRIYPRDSLFARVNLIISGSCGIPKWISHHKKGAKVVAKLPENWYKNNDLLGFVLYSLYDPLDNESEETLENDAAYLKCSLTLRAHESQFVDELQFYPSFRCYDVVPKMWMIYYAKVVIEKKYHSNKWRQLTASFCGFSHGKAMKVEECGIHLIYAHDHEKNNGKAMIPTICRKCQADVQSRRKLCLKGSAINELPTIECPLEFDSLCLRECKNLERLPSSICELKSLTTLNCSGCSRLRSFPEILEDVENLRNLHLDGTAIKELPASIQYLRGLQCLNLADCTNLVSLPETICNLSSLKILDVSFCTKLEEFPKNLRSLQCLECLHASGLNLSMDCFSSILAGIIQLSKLRVVELSHCQGPLQVPELTPSLRVLDVHSCTCLETLSSPSSLLGVSLFKCFKSTIEDLKHEKSSNGVFLPNSDYIGDGICIVVPGSSGIPKWIRNQREGYRITMELPQNCYENDDFLGIAICCVYAPLDECEDIPENDFAHTLENESDDLLEAESSISTELQCQLSLSEGYGSSSLCVRHLSFRSTCKCYHNGGVSEQMWVIFYPKAAILESGPTNPFMYLAATFKDPQSHFKVLKCGLQPIYSQDPIVVQTEDVDARCLDCQRNVEHRKLCLKGQTISLLPIEHASEFDTLCLRECKNLESLPTSIWEFKSLKSLFCSHCSQLQYFPEILENMENLRELHLNETAIKELPSSIEHLNRLEVLNLDRCENLVTLPESICNLCFLEVLNVSYCSKLHKLPQNLGRLQSLKHLRACGLNSTCCQLLSLSGLCSLKNLILTGSKLIQGEILSDICCLYSLEVLDLSFCSIDEGGIPTEICHLSSLRQLLLTGNLFRSIPSGVNQLSMLRLLDLGHCQELRQIPALPSSLRVLDVHECTRLETSSGLLWSSLFNCFKSLIQDFECRIYPRENRFARVHLIISGSCGIPKWISHHKKGAKVVAELPENWYKNNDLLGFVLYSLYDPLDNESEETLENYATSLKCGLTLRAHESQFVDELRFYPTFHCYDVVPNMWMIYYPKVEIEKYHSNKRRWRQLTASFCGFLCGKAMKVEECGIHLIYAHDHEKNNGKAMIPTICQEC* 1551
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g2006 1550 SUPERFAMILY RNI-like 648 854 - -
Vvi18g2006 1550 SMART LRR_typ_2 1293 1316 IPR003591 -
Vvi18g2006 1550 SMART LRR_typ_2 713 735 IPR003591 -
Vvi18g2006 1550 SMART LRR_typ_2 238 261 IPR003591 -
Vvi18g2006 1550 SMART LRR_typ_2 383 406 IPR003591 -
Vvi18g2006 1550 SMART LRR_typ_2 285 309 IPR003591 -
Vvi18g2006 1550 SMART LRR_typ_2 736 760 IPR003591 -
Vvi18g2006 1550 SMART LRR_typ_2 1171 1195 IPR003591 -
Vvi18g2006 1550 SMART LRR_typ_2 1148 1170 IPR003591 -
Vvi18g2006 1550 Pfam C-JID domain 486 623 IPR045344 -
Vvi18g2006 1550 Pfam C-JID domain 901 1060 IPR045344 -
Vvi18g2006 1550 Pfam C-JID domain 1396 1534 IPR045344 -
Vvi18g2006 1550 Gene3D Ribonuclease Inhibitor 156 326 IPR032675 -
Vvi18g2006 1550 Gene3D Ribonuclease Inhibitor 713 879 IPR032675 -
Vvi18g2006 1550 Gene3D Ribonuclease Inhibitor 588 712 IPR032675 -
Vvi18g2006 1550 Gene3D Ribonuclease Inhibitor 1065 1255 IPR032675 -
Vvi18g2006 1550 Gene3D Ribonuclease Inhibitor 327 463 IPR032675 -
Vvi18g2006 1550 PANTHER LEUCINE RICH REPEAT CONTAINING PROTEIN 301 549 - -
Vvi18g2006 1550 ProSiteProfiles Leucine-rich repeat profile. 385 406 IPR001611 GO:0005515
Vvi18g2006 1550 SUPERFAMILY L domain-like 1083 1356 - -
Vvi18g2006 1550 Gene3D Ribonuclease Inhibitor 1256 1355 IPR032675 -
Vvi18g2006 1550 SUPERFAMILY L domain-like 184 443 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g2006 Vvi-Chr18 27764434 27770111 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g2006 671 797 WRKY Transcription Factor Family AT4G12020 40.945 3.81e-18 89.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g2006 - - vvi:100261885 2672.5