Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g2004 ATGAGTTACTCAGTACCCGAAGACCCTTATTTTTCCTCCAATTTCTGTTCAACCATGGCTTCCCCCAGCATCCAGAGACCCTCTTCTTCTTCCACTTCTCACTCTCAGTGGAGCTACGATGTGTTTTTGAGTTTTAGAGGTGAAGATACTCGCAAAAGCTTTACTGATCACCTCTACTCGGCTTTGATTCGTAACAATATTCATACCTTCAGAGATGATGAAGAGCTTCCAAGGGGAGAAGAGATTGCACCAGAGCTCTTAAAAGCTATTGAAGAATCAAGGATTGCCATTATTGTTTTCTCAAAAACCTATGCTCATTCCAAATGGTGTCTGGACGAGCTTGTCAAGATCATGGAATGCAAAGAGGAAAGGGGACAAATAGTTATCCCAATTTTCTATAATGTGGATCCGTCTGAAGTTCGGAAGCAAACTGGGATTTGTGGAGAAGCATTTACCCGTCATGAGGAAAATGCAGACGAGGAGAGAAAGGAAAAGATAAGGAAATGGAGGACTGCCATGGAGCAAGCAGGCAATCTAGCCGGACATGTTGCGGAGAACAGGTATGAGTCAACGCTTATTGATGAAATTATTGAGAACGTTCATGGAAACTTACCTAAGATTTTAGGTGTTAACGAGAACATTGTTGGAATGGATTCTCGTTTGGAAAAACTAATATCATTGTTAAAGATTGAGTCGAATGATGTTCGCATGGTCGGGGTTTATGGTCTTGGTGGAATCGGTAAGACTACCATCATCAATGCTCTTTATAACCAAATCTCACATCAATTCGAAAGTGTTAGCTTGCTCACAAATGTCAGGAAAGAATCCACAAAAAATTCTGGTCTTCTTAAGTTACAACAAAAGCTTCTTGATGATACTCTAAGGACAAAGGGGCAAATAGTTTTAAAGAATGTTTATGAAGGTATCAAAATAATAAGGGATAAGCTTTCCTCAAAAAAGGTTCTTGTTTTTTTGGATGATGTAGATGAGCTGACACAATTAGAACACTTGATTGGAAAGCATAATTGGTTTGGTCCAGGAAGTAGAATCATCATTACTACTAGGAAAAAAGATTTGCTAACTAGGCATGAAGTGAATGATATATATGAAGTTAAGAAATTAAATTTTCACGAAGCTCTTCAACTTTTTTGTCGTTATGCCTTTAAACAACATCATCTGAAGGAAGGTTATGCAGATCTCTCTCATCAAGTAGTACGATATGCTGATGGTCTTCCATTAGCACTTAAAGTTTTGGGTTCTCTATTATTTGGAAAGAGACTACCAAATTGGAAAAGCGAATTGCGGAAGCTGGAAAAGGTGCCTAACATGGAAATTGTAAATGTGCTTAAAATAAGTTTTGATGGATTGGATTATACACAAAGGATGATATTTCTCGACATTGCATGTTTCTTTAAAGGAGGTGATGTGGAAATAGTTTCAAGAATATTGGATGGTTCCGAATTCAATGCGGAAAGTGGAATAAATGCTCTCGTTGATAGGTGTTTCATAACCATTTCAAAGGACAAGACAATAGAGATGCATGATTTGTTAGCCCAAATGGGCAAGGGCATTGTTGATGAAGAATGTCCTAATGAGCCAGGAGAGAGGAGCAGATTATGGAGGCATACAGATATTTATCGAGTATTAAAAAGAAATACGGGGACTGAAAAAATTGAAGGGATATTCCTTGATGTGGACAAATCAGAACAGATACAGTTTACATGCAAAGCTTTCGAAAGGATGAATAGACTTAGATTGCTTGTCGTCTCCCACAATCGCATACAACTTCCTGAAGATTTTGTATTTTCGTCTGATGACTTGACATGTCTCAGTTGGGATGGATATTCTTTAGAATCTCTACCATCAAACTTTCATCCAAATGATCTTGCTCTCCTCAAATTGAGCAATAGTAACATAAAACTACTTTGGAAAGGAAACATGGTATGA 1947 0.3796 MSYSVPEDPYFSSNFCSTMASPSIQRPSSSSTSHSQWSYDVFLSFRGEDTRKSFTDHLYSALIRNNIHTFRDDEELPRGEEIAPELLKAIEESRIAIIVFSKTYAHSKWCLDELVKIMECKEERGQIVIPIFYNVDPSEVRKQTGICGEAFTRHEENADEERKEKIRKWRTAMEQAGNLAGHVAENRYESTLIDEIIENVHGNLPKILGVNENIVGMDSRLEKLISLLKIESNDVRMVGVYGLGGIGKTTIINALYNQISHQFESVSLLTNVRKESTKNSGLLKLQQKLLDDTLRTKGQIVLKNVYEGIKIIRDKLSSKKVLVFLDDVDELTQLEHLIGKHNWFGPGSRIIITTRKKDLLTRHEVNDIYEVKKLNFHEALQLFCRYAFKQHHLKEGYADLSHQVVRYADGLPLALKVLGSLLFGKRLPNWKSELRKLEKVPNMEIVNVLKISFDGLDYTQRMIFLDIACFFKGGDVEIVSRILDGSEFNAESGINALVDRCFITISKDKTIEMHDLLAQMGKGIVDEECPNEPGERSRLWRHTDIYRVLKRNTGTEKIEGIFLDVDKSEQIQFTCKAFERMNRLRLLVVSHNRIQLPEDFVFSSDDLTCLSWDGYSLESLPSNFHPNDLALLKLSNSNIKLLWKGNMV* 649
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g2004 648 SUPERFAMILY Toll/Interleukin receptor TIR domain 28 181 IPR035897 -
Vvi18g2004 648 PRINTS Disease resistance protein signature 408 422 - -
Vvi18g2004 648 PRINTS Disease resistance protein signature 237 252 - -
Vvi18g2004 648 PRINTS Disease resistance protein signature 315 329 - -
Vvi18g2004 648 SMART AAA_5 234 375 IPR003593 GO:0016887
Vvi18g2004 648 Gene3D - 204 369 IPR027417 -
Vvi18g2004 648 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 39 642 IPR044974 GO:0006952
Vvi18g2004 648 SUPERFAMILY "Winged helix" DNA-binding domain 444 550 IPR036390 -
Vvi18g2004 648 ProSiteProfiles TIR domain profile. 37 204 IPR000157 GO:0007165
Vvi18g2004 648 Pfam NB-ARC domain 220 440 IPR002182 GO:0043531
Vvi18g2004 648 Gene3D Ribonuclease Inhibitor 548 647 IPR032675 -
Vvi18g2004 648 SMART till_3 38 179 IPR000157 GO:0007165
Vvi18g2004 648 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 209 467 IPR027417 -
Vvi18g2004 648 Gene3D - 31 203 IPR035897 -
Vvi18g2004 648 Gene3D - 373 457 IPR042197 -
Vvi18g2004 648 FunFam Disease resistance protein (TIR-NBS-LRR class) 35 206 - -
Vvi18g2004 648 Pfam TIR domain 39 200 IPR000157 GO:0007165
Vvi18g2004 648 SUPERFAMILY L domain-like 527 644 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g2004 Vvi-Chr18 27730893 27733782 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g2004 35 645 WRKY Transcription Factor Family AT4G12020 32.045 3.03e-89 302
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g2004 - - vri:117910684 1164.06