Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g2003 ATGTCTTACAATCTGATTATGAGCCATGATTTGAAACACGAGAGCAATTCAAATGGAGTATTTCTCGCTGATTCTCACTACAATGACCATGGAATCTGTATTGTTGTTCCGGGAAGCAGTGGAATTCCCAAGTGGATAAGGAATCAGAGAGAGGGATATCAGACCACAATGGAGCTTCCTCTGAATTGTAATGAAAATGATGACTTCTTGGGAATTGCTATATGCTTTGTTTATGCTCCACTTGATGAATGTGAGGACATACCAGAAAATGATTTGGCACATACATCCGAGAATGAATCTGGTGACGAAGCCCTAAATGAATATGATGATTTACTTGAAGCTGAATCTTCAATCTCCACTGAGTTAAAATGTCAATTGTCATTGAGTGAAGTACATGGATTTTCTTCCCTACGTGTGCGACATCTCAGTTTTCGCACTGCTTGTAAATGCTACCATAATGGAGGTGTATCAGAACAAATGTGGGTGATATTCTATCCCAAGGCTGCTATTCTGGAGAGCTGTCACACCAATCGATTCATGTGTCTTGAGGCTCTATTTATGGGCTCTCGCAATCATTTTAAGGTGGTCAAGTGTGGGCTCCAACCTATATACGCCCAAGATCCAATAGTACAGACTGGGGATGTGGATGCTAGCTGCTTGGAATGTCAGAGGAACGTGGAACACCGACGGCTTTGTTTAAAGGGTCAGACAATCAGCCTACTACCCATTGAGCGTGCCTCTGAATTTGATACCTTATGTTTGCGAGAGTGCAAAAACCTTGAGAGTCTGCCAACAAGCATTTGGGAGTTCAAATCCCTTAAATCTCTCTTTTGCTCTCACTGTTCACAATTACAATACTTTCCAGAAGTCTTGGAGAATATAGAAAACTTAAGGGAGCTTCACTTGAATGAAACGGCTATAAAAGAGCTACCATCATCAATCGAACATTTGAATAGGCTTGAAGTTTTGAATCTGGATGGCTGCAAAAACCTTGTGACTCTTCCAGAAAGCATTTCTAATTTATGCTTTCTTGAAGTTCTCGATGTCAGTTACTGTTCAAAACTCCACAAATTGCCACAAAACCTGGGGAGGCTGCAAAGCTTGAAGCATCTCCATGCTTGTGGCTTAAATTCAACATGTTGCCAATTGCTTTCTTTGTCAGGTTTATGCTCCTTAGAGAAGTTAATTCTACATGGGTCAAAGCTAATGCAAGGAGAAATCCTGAGTGATATTTGCTGCTTGTACTCGTTGAAAGCGTTAGATCTATCTTTCTGCAGTATAGATGAAGGAGGAATCCCCACCGAAATTTGCCACCTATCGTCTCTGCGACAATTACTGCTATTCGGGAATCTTTTTAGGAGCATACCTGCTGGGGTCAATCAACTTTCTATGCTGAGACTCCTTGACTTGGGTCACTGTCAAGAGCTTCGACAAATTCCAGCGCTTCCATCCAGTTTGCGTGTCTTAGATGTACATGAGTGCACACGGCTGGAAACTTCTTCAGGTCTACTCTGGTCTTCTCTATTCAACTGCTTCAAATCAGTGATTCAGGTATGA 1557 0.4175 MSYNLIMSHDLKHESNSNGVFLADSHYNDHGICIVVPGSSGIPKWIRNQREGYQTTMELPLNCNENDDFLGIAICFVYAPLDECEDIPENDLAHTSENESGDEALNEYDDLLEAESSISTELKCQLSLSEVHGFSSLRVRHLSFRTACKCYHNGGVSEQMWVIFYPKAAILESCHTNRFMCLEALFMGSRNHFKVVKCGLQPIYAQDPIVQTGDVDASCLECQRNVEHRRLCLKGQTISLLPIERASEFDTLCLRECKNLESLPTSIWEFKSLKSLFCSHCSQLQYFPEVLENIENLRELHLNETAIKELPSSIEHLNRLEVLNLDGCKNLVTLPESISNLCFLEVLDVSYCSKLHKLPQNLGRLQSLKHLHACGLNSTCCQLLSLSGLCSLEKLILHGSKLMQGEILSDICCLYSLKALDLSFCSIDEGGIPTEICHLSSLRQLLLFGNLFRSIPAGVNQLSMLRLLDLGHCQELRQIPALPSSLRVLDVHECTRLETSSGLLWSSLFNCFKSVIQV* 519
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g2003 518 SUPERFAMILY L domain-like 234 498 - -
Vvi18g2003 518 Pfam C-JID domain 40 208 IPR045344 -
Vvi18g2003 518 SMART LRR_typ_2 439 462 IPR003591 -
Vvi18g2003 518 SMART LRR_typ_2 294 317 IPR003591 -
Vvi18g2003 518 SMART LRR_typ_2 341 365 IPR003591 -
Vvi18g2003 518 Gene3D Ribonuclease Inhibitor 214 401 IPR032675 -
Vvi18g2003 518 PANTHER LEUCINE-RICH REPEAT-CONTAINING 99 426 - -
Vvi18g2003 518 Gene3D Ribonuclease Inhibitor 402 502 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g2003 Vvi-Chr18 27713911 27721484 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g2003 273 498 WRKY Transcription Factor Family AT4G12020 31.250 1.40e-06 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g2003 - - vvi:100261885 1028.47