Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g2002 ATGGAAAACTTAAGGGTGCTTCATTTGAACAAAACGGCTATAAAAGAGCTCCCATCATCAATCAAACATTTGAATAGGCTTGAAGTTTTGAATCTGAACGGCTGCAAAAACCTTGTGACTCTTCCAGAAAGCATTTGTGATTTATGCTTTCTTGAAGTTCTCGATGTCGGTTACTGTTCAAAACTCCACAAATTGCCACAAAACCTGGGGAGGCTGCAAAGCTTGAAGCATCTCCGTGCTTGTGGCTTAAATTCAACATGTTGCCAATTGCTTTCTTTGTCAGGTTTATGCTCCTTAGAGAAGCTAATTCTACATGGGTCAAAGCTAATGCAAGGAGAAATCCTGAGTGATATTTGCTGCTTGTACTCGTTGGAAGTGTTAAATCTATCTTGCTGCAGTATAGATGAAGGAGGAATCCCCACCGAAATTTGCCACCTATCATCTCTGCGACAATTACTGCTAATCGGGAATCTTTTTAGGAGCATACCTGCTGGGGTCAATCAACTTTCTATGCTGAGACTCCTTGACTTGGGTCACTGTCAAGAGCTTCGACAAATTCCAGCGCTTCCATCCAGTTTGCGTGTCTTAGATGTACATGGGTGCACACGGCTGGATACTTCTTCAGGTCTACTCTGGTCTTCTCTATTCAACTGCTTCAAATCAGTGATTCAGGATTTTGAATGCAAGATTTATCCTAGAGAAAAACGTTTTACCCGAGTAAATCTTATTATTTCAGTAAGTTGTGGAATGCCAAAATGGATAAGCCATCACAAAAAGGGAGCTAAAGTAGTAGCAAAGCTTCCTCAAAATTGGTATAAAAATAACGACTTGTTGGGTTTTGTTTTGTACTCTCTCTATGATCCACTTGATAATGAATCTGAGGAGACACTGGAGAATGATGCAACTTACTTCAAGTATGGTTTGACTTTGCGTGGTCATAAAATTCAGTTTGTGGATGAACTCCAGTTTTATCCCTCGTGTCAATGCTATGATGTTGTACCAAAAATGTGGATGACTTATTATCCGAAGGTGGAGATTGTGAAGAAGTACCCCTCAAATAAATGGAGGCAGTTGACAGCTTCATTTTGTGGCTTCTCACGTGGTAAAGCAATGAAAGTGGAAGAGTGTGGGATCCATCTTATATATGCCCATGATCATGAAAAGAACAATGGTAAAGCAATGATACCCACCATTTGCCGGGAATGTCAAGAAGATGTGCAATCCCGACGGAAGCTTTGTTTAAAGGGAAATGCCATCAATGAACTACCCACTATTGAGTGTCCCTTAGAACTTGATAGCTTATGTTTGCGAGAATGCAAAAACCTTGAGCGTCTTCCCAGTAGCATATGTGAGTTTAAATCCCTTACAACTCTCTTCTGCTCAGGATGTTCAGGATTAAGGAGCTTTCCGGAAATCCTTGAGGATGTGGAAAATTTAAGAGAGCTTCATTTAGATGGAACTGCTATAGAAGAACTACCAGCATCAATTCAATATTTAAGAGGGCTTCAATATTTGAATCTTTCAGATTGCACCGACCTTGTGAGTCTTCCAGAAAGCATTTGTAATTTGAGTTCTCTCAAAATTCTAAATGTCAGTTTCTGTACAAAACTTGAGAAATTTCCTGAGAACCTGAGGAGTTTGCAATGTTTAGAGGATTTGTCCGCTTCAGGTCTAAATCTAGGCATGGACTGTTTTAGTAGCATACTTGCAGGCATCATTCAACTTTCTAAACTGAGAGTCCTTGACTTGAGTCACTGCCAGGGGCTTCTACAAGCTCCCGAGCTTCCGCCAAGTTTACGATATCTAGATGTCCACAGTTTGACATGCTTGGAAACTTTATCAAGTCCATCAAGTCTACTTGGTGTTTTTCTGTTCAAATGCTTTAAATCAACAATTGAGGAATTTGAATGCGGCTCCTATTGGGACAAAGCAATCAGAGTTGTTATTTCGGGAAATAATGGAATTCCAGAGTGGATAAGCCAGCAAAAAAAAGGATCTCAAATAACAATAGAGCTTCCTATGGATTGGTACAGAAAAGATGACTTCTTAGGATTTGCTTTATACTCTGCTTTTATTCCTATGGCTTGTGATGGGTTGAATTGCGAACTCAATATCTGTGGTGATCAATCTGAATGCTGTCACGTGGATGATGTCCGGTTTTATTGCTGCGAAATTTGTGGTGAATCAAGTCAAATGTGTGTGACTTATTATCCCAAGGTGGCTATTGACAACCAGTATTGGTCAAACGAATGGAGACGTTTGAAGGCTTCATTTCGTAGCTTTGACGGTACACCAGTCGAAGTGAAAGAGTGGGGGTTCCATCTTATATGTACAGAGTACAATGATGAGCAGAGAAGTTGTGATACCAGATCAGCAGCAGAAGATACTAATTCTAATGCACAAACAAGCAATGACTACACAGTGCACTAA 2430 0.4021 MENLRVLHLNKTAIKELPSSIKHLNRLEVLNLNGCKNLVTLPESICDLCFLEVLDVGYCSKLHKLPQNLGRLQSLKHLRACGLNSTCCQLLSLSGLCSLEKLILHGSKLMQGEILSDICCLYSLEVLNLSCCSIDEGGIPTEICHLSSLRQLLLIGNLFRSIPAGVNQLSMLRLLDLGHCQELRQIPALPSSLRVLDVHGCTRLDTSSGLLWSSLFNCFKSVIQDFECKIYPREKRFTRVNLIISVSCGMPKWISHHKKGAKVVAKLPQNWYKNNDLLGFVLYSLYDPLDNESEETLENDATYFKYGLTLRGHKIQFVDELQFYPSCQCYDVVPKMWMTYYPKVEIVKKYPSNKWRQLTASFCGFSRGKAMKVEECGIHLIYAHDHEKNNGKAMIPTICRECQEDVQSRRKLCLKGNAINELPTIECPLELDSLCLRECKNLERLPSSICEFKSLTTLFCSGCSGLRSFPEILEDVENLRELHLDGTAIEELPASIQYLRGLQYLNLSDCTDLVSLPESICNLSSLKILNVSFCTKLEKFPENLRSLQCLEDLSASGLNLGMDCFSSILAGIIQLSKLRVLDLSHCQGLLQAPELPPSLRYLDVHSLTCLETLSSPSSLLGVFLFKCFKSTIEEFECGSYWDKAIRVVISGNNGIPEWISQQKKGSQITIELPMDWYRKDDFLGFALYSAFIPMACDGLNCELNICGDQSECCHVDDVRFYCCEICGESSQMCVTYYPKVAIDNQYWSNEWRRLKASFRSFDGTPVEVKEWGFHLICTEYNDEQRSCDTRSAAEDTNSNAQTSNDYTVH* 810
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g2002 809 Gene3D Ribonuclease Inhibitor 344 624 IPR032675 -
Vvi18g2002 809 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 57 474 624 - -
Vvi18g2002 809 Pfam C-JID domain 653 780 IPR045344 -
Vvi18g2002 809 Pfam C-JID domain 250 386 IPR045344 -
Vvi18g2002 809 MobiDBLite consensus disorder prediction 791 809 - -
Vvi18g2002 809 SMART LRR_typ_2 146 169 IPR003591 -
Vvi18g2002 809 SMART LRR_typ_2 499 523 IPR003591 -
Vvi18g2002 809 SMART LRR_typ_2 24 48 IPR003591 -
Vvi18g2002 809 SMART LRR_typ_2 476 498 IPR003591 -
Vvi18g2002 809 SMART LRR_typ_2 1 23 IPR003591 -
Vvi18g2002 809 Gene3D Ribonuclease Inhibitor 1 224 IPR032675 -
Vvi18g2002 809 MobiDBLite consensus disorder prediction 790 809 - -
Vvi18g2002 809 SUPERFAMILY L domain-like 2 564 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g2002 Vvi-Chr18 27705194 27707866 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g2002 434 560 WRKY Transcription Factor Family AT4G12020 41.732 1.25e-18 89.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g2002 - - vvi:100261885 1642.09