Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g2001 ATGGCCCTCAACATGAAAACCCTTACCCAAGCCCTAGCCAAAACCGCTGCAGTGATCGAGAAGACGGTTCAGACCACTGTCCAGGAGGTCACCGGACCCAAGCCCCTTCAGGACTACGAACTCCTTGACCAGATCGGCACCGCCGGCCCGGGACTGGCCTGGAAGCTCTACTCCGGCAAGGCCAGGGGTGGATCCGCCGTGTCGCAGCAGTACCCCACGGTGTGCGTGTGGGTTTTGGACAAGAAGGCTCTGTCCGAGGCGAGGACGCGGGCGGGGCTGTCGCGGGCGGCCGAGGAGTCGTTTTTGGATGTGATTAGGGCGGATGCGGGGAGGTTGGTGAGGCTGCGACACCCGGGGGTGGTGCACGTGGTGCAGGCGCTGGATGAGAACAAGAATGCAATGGCGATGGTGACGGAGCCGTTGTTTGCGTCTGTGGCGAATGCGCTGGGGAGTTTGGAGGGGATTGGGAAGGTGCCTAAGGAGCTTAAGGGGATGGAAATGGGATTGTTGGAGGTGAAGCATGGTCTGCTCCAGGTTTCAGAAACCTTGGAATTTCTTCATAACAATGCTCGTCTTATTCATCGGGCTATATCACCTGAGACTGTCGTCATTACTTCAAGTGGAGCTTGGAAACTCAGTGGATTTGGCTTTGCAATTTCTTCAGATCAGGCATCGGGTGATTTAGCTAATGTGCCAGCCTTCCATTATGCTGAATATGATGTTGAGGATTCAATACTGCCCCTTCAGCCAGCACTGAATTACACTGCTCCTGAACTGGTTCGGAGTAGAGGATCTCCAGCTGGATCTGCTTCTGATATTTTCAGTTTTGGATGCCTTGCCTACCACTTGATTGCTCACAAGCCTTTGTTTGACTGCCACAACAATGTGAAGATGTACACGAATAGTTTGACTTATTTAACCAATGAAGCTTTCACATCTATTCCCCCAGAGTTGGTTCCTGATTTGCAAAGAATGCTTTCTACAAATGAGTCTTTTAGGCCAACAGCTTTGGAATTTACAGGTTCTCCATTTTTTCGAGATGACACTAGGTTGCGTGCTCTTCGCTTCTTGGACCACATGCTTGAAAGGGATAACATGCAGAAGTCTGAGTTTCTAAAAGCATTATCGGATATGTGGAAAGATTTTGACTCTCGTGTTTTGCGTTATAAGGTGCTTCCACCTCTTTGTGCAGAACTTCGAAATTTGGTGATGCAACCAATGATTCTTCCCATGGTTCTCACAATAGCGGAGTCTCAGGATAAAAATGAGTTTGAGTTATATACTCTGCCAGCTCTTGTTCCTGTCCTGAGTACTGCTTCAGGTGAGACACTATTGCTGCTTGTGAAGCATGCAGAGCTTATCATCAACAAGACTAGTCATGAGCATTTAGTATCACATGTCCTGCCTTTGCTTGTTCGAGCTTATGATGATAACGATGCTCGCATACAAGAGGAAGTGTTGAGGAGATCTGCGTTCCTTGCCAAGCAACTTGATGCTCAGCTCGTAAAACAAGCTATCTTGCCTCGTGTTCATGGATTGGCTCTTAAAACCACTGTTGCTGCAGTGAGAGTGAATGCTTTGCTATGCTTAAGTGACTTGGTTAGCACACTTGACAAACATGCTGTTCTAGATGTCTTGCAAACAGTCCAACGTTGTACCGCAGTTGACCGTTCTCCTCCAACATTAATGTGTACGCTTGGGATTGCAAACTCAATTCTTAAGCAGTATGGTATAGAATTTGCTGCTGAGCATGTCCTTCCACTACTCACACCTCTTCTCATTGCTCAACAATTGAATGTTCAACAGTTTGCAAAGTACATGCTCTTTGTTAAGGATATCCTCAGGAAGATTGAAGAAAAACGAGGGGTTACCTTAACTGATTCTGGAATGCCACAAGTAAAAACACCTTCTTTTTCTGATGGGCTTCAGTCTGAGGCATTGAAAAAAGTAAGTGGAACAGTCTCTTCTGCAGCAAAAAGCAGCACATCATGGGATGAAGATTGGGGTCCCACAACAAAGGCACCTGCTAATTCTATTCAACCCTCTACGATCTCTATCTCATCCACTCTTCCTTACCCGAGTAATCAGCCAATTGAAGTTGCTTCTATGCAACCACGTTCTTCTTTGACTTCTGCATCAAGTCAGCACACAGCTTCGACATGCCCCCCAGTCGATATTGAGTGGCCGCCTCGGGCATCATCAGGTATGACTCCCAAACTAGGAGATGCTGCGAATCAAAAGCCTAACACAGGGTCTCCATCTACTTCAACTTTTGATGATATAGACCCTTTTGCTGATTGGCCACCGCGACCTGGTGGTTCCTTAAATGTTTCTGGATCTTCCAACAATGGCATAGTGGCATCATCCAACAACAAATATGGGACCACTTCAAGGTCAGGTGCGATGAATGATGTCATCTTCCAAACCAACAGTGATATGAGTTGGGCCTTCAACACCCAGAAATTGGTGGAGCCATCAAGGCAGAACCAGGGGAATTCGACCTTCAATAGTACTAGTTTAAACAGTGGACTCAACTCCCAGAGCTCTATTGGGTTCATGAAACAGAATCAAGGGATTTCAACTTTGGGTTCGTATAATGACAAGAAAACAACAGATCTGGGGTCCATATTTGCTTCTAGCAAGAACGATCATGCTGCACCTAGACTTGCTCCTCCCCCACCAACTGCTGTGGGAAGAGGAAGAGGGAGGGGGAGGGGAAATCAAGGTCATTCAAATGCTAGGCCTGCTCATGCCAAATCACCATCTGAACAGCCGCCCCTTTTGGATTTGCTGTAA 2796 0.4735 MALNMKTLTQALAKTAAVIEKTVQTTVQEVTGPKPLQDYELLDQIGTAGPGLAWKLYSGKARGGSAVSQQYPTVCVWVLDKKALSEARTRAGLSRAAEESFLDVIRADAGRLVRLRHPGVVHVVQALDENKNAMAMVTEPLFASVANALGSLEGIGKVPKELKGMEMGLLEVKHGLLQVSETLEFLHNNARLIHRAISPETVVITSSGAWKLSGFGFAISSDQASGDLANVPAFHYAEYDVEDSILPLQPALNYTAPELVRSRGSPAGSASDIFSFGCLAYHLIAHKPLFDCHNNVKMYTNSLTYLTNEAFTSIPPELVPDLQRMLSTNESFRPTALEFTGSPFFRDDTRLRALRFLDHMLERDNMQKSEFLKALSDMWKDFDSRVLRYKVLPPLCAELRNLVMQPMILPMVLTIAESQDKNEFELYTLPALVPVLSTASGETLLLLVKHAELIINKTSHEHLVSHVLPLLVRAYDDNDARIQEEVLRRSAFLAKQLDAQLVKQAILPRVHGLALKTTVAAVRVNALLCLSDLVSTLDKHAVLDVLQTVQRCTAVDRSPPTLMCTLGIANSILKQYGIEFAAEHVLPLLTPLLIAQQLNVQQFAKYMLFVKDILRKIEEKRGVTLTDSGMPQVKTPSFSDGLQSEALKKVSGTVSSAAKSSTSWDEDWGPTTKAPANSIQPSTISISSTLPYPSNQPIEVASMQPRSSLTSASSQHTASTCPPVDIEWPPRASSGMTPKLGDAANQKPNTGSPSTSTFDDIDPFADWPPRPGGSLNVSGSSNNGIVASSNNKYGTTSRSGAMNDVIFQTNSDMSWAFNTQKLVEPSRQNQGNSTFNSTSLNSGLNSQSSIGFMKQNQGISTLGSYNDKKTTDLGSIFASSKNDHAAPRLAPPPPTAVGRGRGRGRGNQGHSNARPAHAKSPSEQPPLLDLL* 932
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g2001 931 Gene3D Phosphorylase Kinase; domain 1 37 139 - -
Vvi18g2001 931 CDD PK_SCY1_like 45 347 - -
Vvi18g2001 931 Gene3D Transferase(Phosphotransferase) domain 1 156 348 - -
Vvi18g2001 931 MobiDBLite consensus disorder prediction 705 721 - -
Vvi18g2001 931 SMART serkin_6 39 345 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi18g2001 931 ProSiteProfiles Protein kinase domain profile. 39 345 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi18g2001 931 Gene3D - 349 622 IPR011989 -
Vvi18g2001 931 Pfam Protein kinase domain 109 345 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi18g2001 931 SUPERFAMILY Protein kinase-like (PK-like) 34 349 IPR011009 -
Vvi18g2001 931 MobiDBLite consensus disorder prediction 658 679 - -
Vvi18g2001 931 MobiDBLite consensus disorder prediction 880 931 - -
Vvi18g2001 931 MobiDBLite consensus disorder prediction 705 757 - -
Vvi18g2001 931 SUPERFAMILY ARM repeat 347 605 IPR016024 -
Vvi18g2001 931 PANTHER SCY1-RELATED S/T PROTEIN KINASE-LIKE 36 925 - -
Vvi18g2001 931 MobiDBLite consensus disorder prediction 824 843 - -
Vvi18g2001 931 MobiDBLite consensus disorder prediction 739 757 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g2001 105 368 Miscellaneous Gene Families AT1G29230 24.188 1.61e-10 62.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK SCY1_SCYL2 Vvi18g2001 Pkinase 1.1e-19 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g2001 K17541 - vvi:100256813 1759.96