Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1996 ATGGCATCTTCTTCTTCTTCTTCTTCTTCTTCTTCTACTACTACTACTATTTCTTACTGGAAGTTTGATGTGTTCCTTAGTTTTAGAGGAGAAGATACCCGCTACACTTTTACTGACCATCTCTATAAGGCCTTGCGTGCAAAAGGAATTGAGACCTTTATGGATTATCAGCTTAGAAGAGGTGAGTTGATAACTCCGGCACTTGTTACAGCAATTGAAGGATCAAGACATTCCATCATTGTTTTGTCAGAAAACTATGCATCCTCAAAGTGGTGCCTAGATGAACTGGTGAAGATATTACAGTCCCAAAATACCAAAGAACGGAGGGCTGTGCCAATTTTCTACAATGTGAATCCGTCAGATGTTGGAAACCAGAGGGGAAGTTTCGGAAAAGCCTTGGCTGACCATGAAGAGAAGTTGAAAGCAGACCATGAAAAGAAGTTGAAGTATGATATGGAGAGGGTGCAGAGATGGAGGAAGGCTCTCACCCAAGTTGGCAAGATATCTGGATTCACTTCATCTCGTGATAAGCCTGAGACTCAGTTTATTGAAGAAATTGTCACGGATATTTCCAAAGATTTAAATTGTGTATCCTCAAGTGATGCGAAGAATCTAGTGGGAATGAATTGTTGCATAAGAGAAATGGAGTCACTATTGTGTCTTGAATCAACTAAAGTTCTTATGGTAGGAATTTGGGGTATGGGCGGCATTGGCAAGACAACCCTTGCCAGAGTTATTTATGAGCGTGTTTTATGTCAATTTGAAGGTTATTGCTTTCTAGCAGGCTTAAAAAGCACAAGTATGGATAATTTAAAAGCAGAACTTCTTTCAAAGGTATTAGGGGATAAAAATATAAATATGGGACTCACTTCAATAAAGGCGAGACTTCATTCTAAAAAAGTCCTTGTTGTTATTGATGATGTGAATCACCAATCCATGTTAGAAACATTAGTAGGGGGACATGATTGGTTTGGTCCACAAAGTCGAGTTATTATAACAACAAGGGATAAACATCTTCTAACTGTGCAAGGTGTTGATGCAGTATATGAAGTACAAAAATTAGAGGATGATAATGCCATTCAGCTCTTTAGTTATTATGCCTTTAAAAATAAACCTCCTACAAGAGATGTTATGAAGCTCTTGGATCAAATAACATCTTATGCTCAAGGTCTTCCATTGGCTCTCAAAGTTTTGGGTTGTTCTTTGTGTGATAGAAATGCTGACTATTGGACAGATAAGTTGAATCAATTGAAAAAAATCTCTAATGGGGAAATTCAAGAAGTGCTTCAAATAAGTTTTGATGGATTAGAGGATAATGAGAAAGAGATATTTCTAGATATTGCATGTTTCTTTAGAGGAAGAGGCCAAACTTTTGTAAAGAAAATATTAGAGAGTTGTGGCTTCTCTATGGTTAGCGGAATAGAAAATCTAATTGATAAATCTCTTATAACCATTACTCAGGACGATAGATTGGAGATGCATGATTTACTTCAAGAAGTGGGTTGGCAAATCATTCGCAAGACTTCTCCTAAAGAGCCTGGCAGACGCAGCAGATTATGGGAACAAAAGGATGTCTCTCATATTTTGAAACGGGAAACGGGAGCTCAAGAAGTTGAAGGCATATTCTTTGACTTATCTGGTTTGGAGGAGATGAACTTTACCACTAAAGCCTTTTCCCAGATGACTAATCTTAGGTTGCTTGAAATCTACCGATCTAACCTTCGAGATACCGGGGGAAAGATGCAATGTAAATTGCACGTTTCTGATGACTTCAAATTTCATTACGATGAGTTGAGGTATCTACATTGGGATGAATACCCATGTGAATCACTGCCATTCGATTTTGAGTCCGAGAATCTTGTTCACTTCTGCATGCCTCGTAGCCGCCATCTTACTCAGCTCTGGAAAGGACAAAAGGTCTTTGGAAACCTCGAATTTGTGGATGTCAGTTACTCCCAATACCTAAAAGAAACTCCCGATTTTTCAAGAGCCACAAATCTTGAAGTTTTGGTTCTCAAAGGATGTACAAATTTGCGTAAGGTTCACCCTTCCCTTGGATACTTGAGCAAACTCATTTTGTTGAATTTGGAAAACTGCACAAACCTTGAGCATCTTCCAAGCATCCGTTGGTTGGTATCCCTTGAAACCCTTATTCTCTCGGGTTGCTCAAAGCTAGAGAAGTTACCAGAAGTTCCACAGCATATGCCATATTTATCAAAGCTCTGTCTAGATGGGACTGCTATAACAGACTTTTCTGGCTGGTCAGAACTTGGAAATTTTCAAGAGAACTCAGGGAATTTAGACTGCTTAAATGAGCTCAATTCAGATGATTCCACCATAAGACAACTACCTTCTTCCAGTGTTGTCCTGAGAAATCATAATGCATCTCCTTCGTCTGCGCCTAGAAGATCACATTCCATTCGTCCTCATTGCACCTTAACCTCACTGACGTATCTGAACCTTAGTGGAACCTCCATCATTCGCCTACCTTGGAACTTGGAACGACTTTTTATGCTGCAGAGGCTTGAGTTGACAAATTGCAGAAGGCTTCAAGCACTGCCAGTGCTTCCATCGAGTATAGAACGTATGAATGCAAGTAACTGCACATCACTGGAACTCGTCTCCCCTCAGTCAGTTTTCAAACGTTTTGGAGGTTTTCTATTTGGTAATTGCTTCAAACTGAGGAACTGTCATAGTAAGATGGAGCATGATGTACAGAGTGTGGCATCGCATGTTGTCCCAGGTGCATGGAGGTCCACTTATGCAAGCGTAAGTTCTCTTTTGGTTTCATATCATAATTTCCACATTTTTGCCGAAATGCTACTTTCGCTGTGCCTTCATGATTTTTGCTTCTCCTAA 2859 0.3966 MASSSSSSSSSSTTTTISYWKFDVFLSFRGEDTRYTFTDHLYKALRAKGIETFMDYQLRRGELITPALVTAIEGSRHSIIVLSENYASSKWCLDELVKILQSQNTKERRAVPIFYNVNPSDVGNQRGSFGKALADHEEKLKADHEKKLKYDMERVQRWRKALTQVGKISGFTSSRDKPETQFIEEIVTDISKDLNCVSSSDAKNLVGMNCCIREMESLLCLESTKVLMVGIWGMGGIGKTTLARVIYERVLCQFEGYCFLAGLKSTSMDNLKAELLSKVLGDKNINMGLTSIKARLHSKKVLVVIDDVNHQSMLETLVGGHDWFGPQSRVIITTRDKHLLTVQGVDAVYEVQKLEDDNAIQLFSYYAFKNKPPTRDVMKLLDQITSYAQGLPLALKVLGCSLCDRNADYWTDKLNQLKKISNGEIQEVLQISFDGLEDNEKEIFLDIACFFRGRGQTFVKKILESCGFSMVSGIENLIDKSLITITQDDRLEMHDLLQEVGWQIIRKTSPKEPGRRSRLWEQKDVSHILKRETGAQEVEGIFFDLSGLEEMNFTTKAFSQMTNLRLLEIYRSNLRDTGGKMQCKLHVSDDFKFHYDELRYLHWDEYPCESLPFDFESENLVHFCMPRSRHLTQLWKGQKVFGNLEFVDVSYSQYLKETPDFSRATNLEVLVLKGCTNLRKVHPSLGYLSKLILLNLENCTNLEHLPSIRWLVSLETLILSGCSKLEKLPEVPQHMPYLSKLCLDGTAITDFSGWSELGNFQENSGNLDCLNELNSDDSTIRQLPSSSVVLRNHNASPSSAPRRSHSIRPHCTLTSLTYLNLSGTSIIRLPWNLERLFMLQRLELTNCRRLQALPVLPSSIERMNASNCTSLELVSPQSVFKRFGGFLFGNCFKLRNCHSKMEHDVQSVASHVVPGAWRSTYASVSSLLVSYHNFHIFAEMLLSLCLHDFCFS* 953
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1996 952 Gene3D - 16 198 IPR035897 -
Vvi18g1996 952 Gene3D Ribonuclease Inhibitor 802 942 IPR032675 -
Vvi18g1996 952 SMART till_3 21 168 IPR000157 GO:0007165
Vvi18g1996 952 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 195 447 IPR027417 -
Vvi18g1996 952 Gene3D Ribonuclease Inhibitor 526 744 IPR032675 -
Vvi18g1996 952 SUPERFAMILY "Winged helix" DNA-binding domain 424 530 IPR036390 -
Vvi18g1996 952 Gene3D - 353 437 IPR042197 -
Vvi18g1996 952 Gene3D - 199 347 IPR027417 -
Vvi18g1996 952 FunFam Disease resistance protein RPS4 535 733 - -
Vvi18g1996 952 ProSiteProfiles TIR domain profile. 20 194 IPR000157 GO:0007165
Vvi18g1996 952 FunFam Disease resistance protein (TIR-NBS-LRR class) 355 437 - -
Vvi18g1996 952 Pfam TIR domain 21 207 IPR000157 GO:0007165
Vvi18g1996 952 SUPERFAMILY L domain-like 506 900 - -
Vvi18g1996 952 PRINTS Disease resistance protein signature 686 702 - -
Vvi18g1996 952 PRINTS Disease resistance protein signature 228 243 - -
Vvi18g1996 952 PRINTS Disease resistance protein signature 295 309 - -
Vvi18g1996 952 PRINTS Disease resistance protein signature 388 402 - -
Vvi18g1996 952 Pfam NB-ARC domain 219 423 IPR002182 GO:0043531
Vvi18g1996 952 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 23 732 IPR044974 GO:0006952
Vvi18g1996 952 FunFam Disease resistance protein (TIR-NBS-LRR class) 18 196 - -
Vvi18g1996 952 SUPERFAMILY Toll/Interleukin receptor TIR domain 14 171 IPR035897 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g1996 Vvi-Chr18 27596149 27600827 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g1996 22 859 WRKY Transcription Factor Family AT4G12020 32.948 4.86e-112 378
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1996 - - vri:117907837 1742.63