Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1991 ATGTTGAGTTTTGAAGGTTGTACACAGTTGCATAAAATTCACTCGTCTCTTGGAGATTTGGACAAACTCTGTCGCTTGAATTTCAAAAACTGCATAAATCTTGAGCATTTTCCAGGCCTGGATCAGTTGGTATCCCTTGAAGCTCTCAATCTCTCTGGTTGCTCAAAGCTAGAGAAGTTTCCGGTTATCTCACAGCCCATGCATTGCTTATCCAAGCTCTGTTTTGACGGGACTGCTATAACAGAACTCCCCTCCTCAATTGCTTATGCCACCAAGCTTGTTGTGCTGGATTTACAAAATTGCGAAAAGCTCCTGAGTCTTCCAAGCAGCATTTGTAAATTGGCACATCTTGAGACCCTTTCTCTTTCTGGCTGCTCAAGACTTGGAAAACCTCAAGTAAACTCAGACAACTTGGATGCTTTGCCAAGGATCTTGGATCGACTTTCTCATCTACGGGAGCTTCAGTTGCAAGATTGCAGGAGCCTTCGAGCATTGCCACCACTTCCATCAAGTATGGAACTTATAAATGCAAGTGATAATTGCACATCACTTGAGTACATCTCCCCTCAATCAGTTTTCCTATGTTTTGGAGGCTCTATATTTGGTAATTGCTTCCAACTGACCAAGTATCAAAGTAAGATGGGGCCTCATTTACGGAGAATGGCAACCCATTTTGACCAAGATAGATGGAAGTCCGCTTATGATCAACAATACCCAAACGTTCAGGTGCCATTCAGTACTGTTTTTCCTGGAAGTACAATACCTGATTGGTTCATGCATTATAGTAAGGGGCATGAAGTCGATATAGATGTAGATCCAGATTGGTACGATAGTAGTTTCCTGGGTTTTGCACTTTCTGCTGTTATAGCACCCAAGGATGGGTCCATTACAAGGGGTTGGTCCACCTACTGTAACTTGGATTTACATGATCTTAATTCCGAATCCGAATCCGAATCCGAATCCAGTTGGGTATGTTCCTTTACTGATGCTCGTACTTGCCAACTTGAAGATACGACAATTAATTCAGATCATCTGTGGCTGGCCTATGTACCATCGTTTTTGGGCTTCAATGATAAGAAATGGAGTCGCATTAAGTTTTCATTTAGTACAAGCAGGAAGTCCTGCATTGTGAAGCATTGGGGAGTTTGTCCATTGTACATTGAAGGTAGCAGTGATGACAACTATAACCGTGATGGCGATTATTCCAGTGGGAGATGCTGCTTGAATGAGGGCCTTGGAGTGCAGACTAGTAGTGACAACAACATTGATGATGAGGGGAATGCTTGTGGAAGTGTCCTTGATGATCTACGTGAATGGGGATTAGAAGATATCATAATCAGGAGAAGCCCTGAAGATGACCAACCCAGTGGACAGGTCTATGAAGATGCGAATGGCACACATGCCTGGAACCAAGAAAGGCTTCGGATGCAGCCAAACCCTCTCATAGCACAGACTAGTTATGGCCAGTACACTCATGAAAGGAATCCTGCTAAAAGTGTCCTTGATTATCGCTATGAATCCACATTTGAAGATGGCATAGTCAGGATGAGAAGCCTTCTTGAGGAGTACCCCGGAGTAATTGGTTTCTCTCCTACTGACTCACACTCCTGGGACCAAGAAAGGCTTGGGAGGCAGCCAAACCCTCCCATATCCAACAGTGAGACTGGGTTTTGGATTTGTATCACTATTTTTAGCTTCTTCTTTCTTGCTCACATTTTCCATTCCGCTTCATTTCGGATCTCGCCACTTCTCGGCGTGTTACTCTTGCTTTTTATCTTTAGTCGGCTATAG 1791 0.4366 MLSFEGCTQLHKIHSSLGDLDKLCRLNFKNCINLEHFPGLDQLVSLEALNLSGCSKLEKFPVISQPMHCLSKLCFDGTAITELPSSIAYATKLVVLDLQNCEKLLSLPSSICKLAHLETLSLSGCSRLGKPQVNSDNLDALPRILDRLSHLRELQLQDCRSLRALPPLPSSMELINASDNCTSLEYISPQSVFLCFGGSIFGNCFQLTKYQSKMGPHLRRMATHFDQDRWKSAYDQQYPNVQVPFSTVFPGSTIPDWFMHYSKGHEVDIDVDPDWYDSSFLGFALSAVIAPKDGSITRGWSTYCNLDLHDLNSESESESESSWVCSFTDARTCQLEDTTINSDHLWLAYVPSFLGFNDKKWSRIKFSFSTSRKSCIVKHWGVCPLYIEGSSDDNYNRDGDYSSGRCCLNEGLGVQTSSDNNIDDEGNACGSVLDDLREWGLEDIIIRRSPEDDQPSGQVYEDANGTHAWNQERLRMQPNPLIAQTSYGQYTHERNPAKSVLDYRYESTFEDGIVRMRSLLEEYPGVIGFSPTDSHSWDQERLGRQPNPPISNSETGFWICITIFSFFFLAHIFHSASFRISPLLGVLLLLFIFSRL* 597
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1991 596 Pfam BspA type Leucine rich repeat region (6 copies) 3 83 IPR026906 -
Vvi18g1991 596 SUPERFAMILY L domain-like 4 209 - -
Vvi18g1991 596 Gene3D Ribonuclease Inhibitor 42 191 IPR032675 -
Vvi18g1991 596 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 57 68 184 - -
Vvi18g1991 596 Pfam C-JID domain 249 388 IPR045344 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g1991 Vvi-Chr18 27481319 27483541 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g1991 2 179 WRKY Transcription Factor Family AT4G12020 42.697 8.80e-23 102
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1991 - - vvi:100256757 1214.52