Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1988 ATGTCACTCATAAGTATTATTGATGATGAGTTACATATACATGATTTACTAAGAGAAATGGGTAGGGAAATTGTTCGTCGAACTTCTCCTAAAGAGCCTGGCAAACGCAGTAGACTATGGATGCAACAGGACATCTATCATGGAACGGAGGATATTGAAGTCATAGTCCTCAATTTGACTGGGCTAAAGGAAATACGATTTACCACTGCAGCCTTTGCCAAGATGACTAAACTTAGAATGCTTATAATCATCTCTGAATGTAGCGCCAACCAGATGCAATGTAAAGTACACATTTCTGATGACTTCAAATTTCATTATGATGAGTTGAGATTGCTTTTTTGGGACCGATGTCCTCTTAAATTACTGCCATCTGATTTTAAGTCGAAGAATCTTTTGCGGCTCTGCATGCCTAATAGCCACCTTACTCAGCTCTGGGAAGGAAATAAGATTTTTGAAAACTTAAAATATATAGTTCTCAATGACAGTAAATACCTAACAGAAACTCCGGATTTATCAAGGGTCACCAATCTTAAGTTGTTGAATCTGGATGGTTGTACACAATTGTGTAAAATTCACTCATCCCTTGGCGATTTGGACAAACTCACTGAGTTGAGTTTCAAAAGCTGCATAAACCTTGAGCATTTTCCAGACCTCAGTCAGTTGATATCACTTCAATATCTCATTCTCTCAGGTTGCTCAAAGCTAGAGAAGTCTCCAGTTATCTCACAGCACATGCCATGCTTAAGGAGGCTCTGTTTAGATGGAACGGCTATAACAGAACTCCCCTCCTCAATTGCTTATGCCACTCAGCTTGTTCTATTGGATTTAAAAAATTGCAGAAAGCTCCTGAGTCTTCCAAGCAGCATTAGTAAATTGACACTTCTTGAGACCCTTTCTCTTTCTGGCTGCTTGGATCTTGGAAAATGTCAGGTGAACTCAGGGAACTTAGATGCGCTGCCACAGACCTTGGATCGACTTTGTAGTCTTCGGAGGCTTGAGCTGCAAAATTGCAGTGGCCTACCATCTTTGCCAGCGCTTCCATCAAGCGTGGAACTTATAAATGCAAGTAATTGCAAATCACTGGAAGACATCTCCCCTCAATCAGTTTTCTTATGTTTTGGAGGTTCTATATTTGGAAATTGCTTCAAACTAAGCAAGTATCCAAGTACGATGGAGCGTGATTTACAGAGAATGGCAGCCCATGCTAACCAAGAGAGATGGTGGTCCACTTTTGAGCAACAAAACCCAAATGGCATGAAATAA 1263 0.4046 MSLISIIDDELHIHDLLREMGREIVRRTSPKEPGKRSRLWMQQDIYHGTEDIEVIVLNLTGLKEIRFTTAAFAKMTKLRMLIIISECSANQMQCKVHISDDFKFHYDELRLLFWDRCPLKLLPSDFKSKNLLRLCMPNSHLTQLWEGNKIFENLKYIVLNDSKYLTETPDLSRVTNLKLLNLDGCTQLCKIHSSLGDLDKLTELSFKSCINLEHFPDLSQLISLQYLILSGCSKLEKSPVISQHMPCLRRLCLDGTAITELPSSIAYATQLVLLDLKNCRKLLSLPSSISKLTLLETLSLSGCLDLGKCQVNSGNLDALPQTLDRLCSLRRLELQNCSGLPSLPALPSSVELINASNCKSLEDISPQSVFLCFGGSIFGNCFKLSKYPSTMERDLQRMAAHANQERWWSTFEQQNPNGMK* 421
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1988 420 Pfam Leucine Rich Repeat 130 149 IPR011713 -
Vvi18g1988 420 Gene3D Ribonuclease Inhibitor 41 400 IPR032675 -
Vvi18g1988 420 SUPERFAMILY L domain-like 26 374 - -
Vvi18g1988 420 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 248 361 IPR044974 GO:0006952
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g1988 Vvi-Chr18 27443467 27445885 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g1988 16 355 WRKY Transcription Factor Family AT4G12020 38.418 3.87e-51 183
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1988 - - vvi:100256757 567.385