Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1978 ATGGAATGGTTTTATGATGTGCATGGGGGTGGGGGAAGAGATGTTAATGCAAAGTTGAATGAAGTTGCTTTTGCTATGGAGAATACAAAGAAGGGTCCGAAACAGCGCCTCCATATTTTTATTTTCTTCATCCTACTTCCTTCCCGGATCTTCCCATTTATCATCTTCAACGTAACCAATGCGCACCAAACTCGACGTTTTTTATTCCTTTACGTAAAGTGCAACGAGGTTCGGCTTATTTTGCAATATATATATAAATTGTACCTTTGCTTGAATGTAGAGATAAGATGTGTTCGAGCTTTATGTTTGTGGAGGAATAGCTCTTCTGAAGTTAATGATGAGCTATTTAAGGGTTATCGTGAAGGAAATTTAGAGAAGAAGATCAATGAGTTTGCTGCAGCATTCGACTTCTCAAACTCCAACAAGACTAATTTTAATGTGACTATATGGTACAATTCAACTCATGAGCTAGCACGCTTGGTTAACCTGGTATGTATCATTTCTAAACTACATGACCTCCTTGCATCGAATGCCTACCTCCTGTCTCTGAAAGATGGTGGTACAAAGGTGCTATTAGATTTCATGAAGGGAATGCCCCAACCTAGCAGTAACCCACCCAGACTAGACGTTGCTTCTGCATTCGGAGTACTGTCATTTACTTGGGTTGTTATGCAATTTTTCCCTATGGTGTTGACATCTCTGGTTCAGGAGAAAGAAAGTAATCTGAGAATAATGATGAAAATACATGGCCTAGATGACAGACTTTATTGGGTGATTTCTTATACCTATTTTGTTCTCGAATTTGTTATCTACATGCTATGTCTGGTAGCATTTGCTTCAGTTCTAGGGTTACAATTCTTCACTATGAATGACTTCAAAATCCAATTTCTCTTCTACTTCATCGGTATAAACTTGCAAATTTCAATGGCATTTCTAATGGCGCCAATTCTTTCAAATGTTAAAATGATTACAGTAATAACATTCGCATTGCTTTTTGGATCAAGGCTCTCTGGGAAGTCTGTTTTTGAGTTCTTTCTTGAAGATACAACATTGTCAAGACATTGGATTATTGTTATGGAGCTATATCCTGCTTTCTCTCTTTACCGTGGTATATATGAGCTCGCACAATATTCTCTCATGGGTAGTGCAACAGGAACCCAAGGGATGCAATGGAGAGATTTGAGCGACCCTGAGAATGGGATGAGGGATGTCTGCATTATTATGATGGTCGAATGGTTGGTAGTACTTTTTATTGCATACGACATCGATCAACAACGAATATCATCAAGGAATGGATCAAACTTAAAAAGCCAAAAATTTTCTGCAGTTTCCCCACAGGTGGAAAATATTGACGTTTTCGAAGAGAGGGAGAAAGTTGAACGATGGCTGCATAAACCCACGTCGATTTATTCAATCATTTGTCATAATCTTGAAAAGGTGTATCCAGAAAGGGATGGAAACCCTAAGAAAATTGGAGTGAGGGGGTTGTCTCTAGCTATATCCAAAGGGGAGTGCTTTGGTATAGTTGGTGACAGTGATGCAGGCAAAACCTCTTTCATTAGTATGATGACTGGGATCACAAAGCCAACCTCTGGCAAAGCATTCATTGAAGGTCTGGATATAGAGAGTCAAATAAAAGAAATATATACAAGAATAGGTTATTGCCCTCAGATTGACCTTCTCTGGGAAACTCTAACTGGGAGGGAGCACCTCCAATTTTATGGAAGGGTTAAAAACCTCGTAGGTCCTGCCTTGACACAGGCGGTGGAAAACTCTCTTAGGAGAGTAAACCTTGTTCGTGGAGGTGTTGGTGACAAGGAAGTCAGTGAATATAGTAGATCAGAGAAGAGGAGGCTTAGTGTTGCCATTTCATTGATTGGAAATCCTCAAGTGGTCTTTATGGAAGAACCTACCGTTGGTTTAGATCCGGTATTGAGAACCAGTTTATGGAATGCTATAAAGCATGCAAAGCAAGATCGAACGATTATTTTGACAACACAATCAATGGAAGAGGCAGAGGCTCTATGTGATAGAATAGGAGTTCTAGCAGATGGCTGTTTGCAATGTATAGCCAGCCCTCGAGAGCTGAAGGCTAGATTTGAAAGATTTGAAGAATCTTCCACGTTTAAGGACACAACACCCCCCTGCCAGAAGGATGAGTTGCGTCGCCTTTTCGGTTTGCCAACTTCTAGTGGGTCAGTGGAAAAATAG 2211 0.4021 MEWFYDVHGGGGRDVNAKLNEVAFAMENTKKGPKQRLHIFIFFILLPSRIFPFIIFNVTNAHQTRRFLFLYVKCNEVRLILQYIYKLYLCLNVEIRCVRALCLWRNSSSEVNDELFKGYREGNLEKKINEFAAAFDFSNSNKTNFNVTIWYNSTHELARLVNLVCIISKLHDLLASNAYLLSLKDGGTKVLLDFMKGMPQPSSNPPRLDVASAFGVLSFTWVVMQFFPMVLTSLVQEKESNLRIMMKIHGLDDRLYWVISYTYFVLEFVIYMLCLVAFASVLGLQFFTMNDFKIQFLFYFIGINLQISMAFLMAPILSNVKMITVITFALLFGSRLSGKSVFEFFLEDTTLSRHWIIVMELYPAFSLYRGIYELAQYSLMGSATGTQGMQWRDLSDPENGMRDVCIIMMVEWLVVLFIAYDIDQQRISSRNGSNLKSQKFSAVSPQVENIDVFEEREKVERWLHKPTSIYSIICHNLEKVYPERDGNPKKIGVRGLSLAISKGECFGIVGDSDAGKTSFISMMTGITKPTSGKAFIEGLDIESQIKEIYTRIGYCPQIDLLWETLTGREHLQFYGRVKNLVGPALTQAVENSLRRVNLVRGGVGDKEVSEYSRSEKRRLSVAISLIGNPQVVFMEEPTVGLDPVLRTSLWNAIKHAKQDRTIILTTQSMEEAEALCDRIGVLADGCLQCIASPRELKARFERFEESSTFKDTTPPCQKDELRRLFGLPTSSGSVEK* 737
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1978 736 SMART AAA_5 502 685 IPR003593 GO:0016887
Vvi18g1978 736 Pfam ABC transporter 494 638 IPR003439 GO:0005524
Vvi18g1978 736 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 472 701 IPR027417 -
Vvi18g1978 736 CDD ABC_subfamily_A 476 697 - -
Vvi18g1978 736 Gene3D - 464 722 IPR027417 -
Vvi18g1978 736 Pfam ABC-2 family transporter protein 204 419 IPR013525 GO:0016020|GO:0140359
Vvi18g1978 736 PANTHER ATP-BINDING CASSETTE TRANSPORTER SUBFAMILY A ABCA 447 702 IPR026082 GO:0016020|GO:0055085|GO:0140359
Vvi18g1978 736 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 472 709 IPR003439 GO:0005524
Vvi18g1978 736 FunFam ABC transporter A family member 2 463 717 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g1978 Vvi-Chr18 27367072 27377291 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g1978 476 701 Calmodulin-binding Proteins AT2G36910 23.629 4.20e-09 58.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1978 - - vvi:100249943 1233.01