Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1973 ATGCACTTCAAATGTGGCAGGCCTGAGTCCATGCTTATCAAGGAAATCGTTGGACTTATTTCGAATAGCATGATTTGCAGATCCTCAAAGGACACCGAGCTGGCCATAAATGGGAAAGATGTTCTCACTATAGGAATCTGGGGCATGGGGGGAATAGGGAAGACGACCCTTGCCAGAGCTGTTTTTGATCACTTCTCTGGCCAATTTGATGGTTGCTGTTTTCTTGAAAATGTTAGAGAAGATTCGGAAAAATATGGCTTACCTTATTTGTATAGGAAGCTTTTTTACCAGCTATTAGGTGCGTCCAGTTCCAGCACAGGGTTCTCTTCTATGAAAGCAAGGCTCCGCTCCAGAAGGGTTCTTATTGTTTTGGATGATGTGGCTAATTTAGAGCAGTTAGAATTCTTAGCTGGAAAGAATCCTCAGTTTGGTCCTGGAAGTAGAATAATTATAACCACTAGAGGAAAACATCTGTTAATTACGTTTGGAGTGAATGAAATACGAGAAGCTGAGAAACTGAGTCTGAAAAATGCTATCAGGCTCTTTCAACAACATCATCACAAAGAAGTTTTCATGAAGCTCTCCAGCCATGTTATAGAATATATTAATGTCGGTTCTTTGCTATCCAGGAAGAGCAAACTTAAATGGAGAAGTGAATTAATGGATAATGAGTCTCAGTCAGAGGAAAATGAACAACTTTCCAGATCCATACAGGAAGACCTTATTTATACTTATCCACCTCCTTTTGGAAATGAAAGTATCTATCAAGCCATTCCATTCCCTGTTTTGACCGGGTTCAAGATCTGTGCTGGTTGCGGTACCGAGATTATTCTGAGGCGATATCTGAAGTGCATAGGCAAAGTTTGGCATCCAGAATGTTTTAGATGCCATGCTTGTAAGCACCCAATCTCTGACTATGAATTCTTTCTCTCTGGAGAGTCACCTTATCATAAATCTTGCTACAAGGAAAAGTGTCGCCAAAAATGCGATGTTTGTGGGCATTTCTTTTGGGCAAACCCTGCTTGTCTTATGGAAGATAGGGAACATCCTTTCTGGGTCCAGAAGTACTGTCCTTCTCATAAGCATGATGGAACTCCTTCCTGCTTTAGCTGTGAGCGAAAGGAGCCATGGGACACAAGATATACAACTCTTAAAGATGGACGCAAGCTCTGCCTGGAGTGTCTGACCATGCAATCATGGACACTCATGAATACCAGCCCCTGTATCTTAATGTGCAAAGGTTCTGTGAAAGCTTAA 1257 0.4169 MHFKCGRPESMLIKEIVGLISNSMICRSSKDTELAINGKDVLTIGIWGMGGIGKTTLARAVFDHFSGQFDGCCFLENVREDSEKYGLPYLYRKLFYQLLGASSSSTGFSSMKARLRSRRVLIVLDDVANLEQLEFLAGKNPQFGPGSRIIITTRGKHLLITFGVNEIREAEKLSLKNAIRLFQQHHHKEVFMKLSSHVIEYINVGSLLSRKSKLKWRSELMDNESQSEENEQLSRSIQEDLIYTYPPPFGNESIYQAIPFPVLTGFKICAGCGTEIILRRYLKCIGKVWHPECFRCHACKHPISDYEFFLSGESPYHKSCYKEKCRQKCDVCGHFFWANPACLMEDREHPFWVQKYCPSHKHDGTPSCFSCERKEPWDTRYTTLKDGRKLCLECLTMQSWTLMNTSPCILMCKGSVKA* 419
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1973 418 PRINTS Disease resistance protein signature 43 58 - -
Vvi18g1973 418 PRINTS Disease resistance protein signature 114 128 - -
Vvi18g1973 418 Pfam LIM domain 269 323 IPR001781 -
Vvi18g1973 418 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 34 230 IPR027417 -
Vvi18g1973 418 Gene3D - 21 164 IPR027417 -
Vvi18g1973 418 SMART lim_4 268 320 IPR001781 -
Vvi18g1973 418 CDD LIM_DA1 269 321 - -
Vvi18g1973 418 ProSiteProfiles LIM domain profile. 267 327 IPR001781 -
Vvi18g1973 418 FunFam Uncharacterized protein 263 340 - -
Vvi18g1973 418 Gene3D Cysteine Rich Protein 265 328 - -
Vvi18g1973 418 Pfam NB-ARC domain 38 185 IPR002182 GO:0043531
Vvi18g1973 418 ProSitePatterns LIM zinc-binding domain signature. 269 303 IPR001781 -
Vvi18g1973 418 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 263 294 - -
Vvi18g1973 418 PANTHER PROTEIN DA1-RELATED 2 206 398 IPR045218 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g1973 Vvi-Chr18 27324239 27325815 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g1973 40 203 WRKY Transcription Factor Family AT5G45050 41.714 7.59e-28 114
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Vvi18g1973 NB-ARC 3e-16 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1973 - - vvi:100246577 670.618