Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1972 ATGCTTATCAAGGAAATCGTTGGACATATTTCGAATAGAATGATTTGCAGATCCTCAAAGGACACCGAGCTGGCCATAAATGGGGACGATGTTCTCACTATAGGAATCTGGGGCATGGGGGGAATAGGGAAGACGATCCTTGCCAGAGCTGTTTTTGATCACTTCTCTGGCCAATTTGAAGGTTGCTGTTTTCTTGAAAATGTTAGAGAAGATTCGGAAAAATATGGCTTACTTTATTTGTATAGGAAGCTTTTTTCCCAGCTATTAGGTGCGTCCAGTTCCAGCACAGGGTTCTCTTCTATGAAAGCAAGGCTCCGCTCCAAAAGGGTTCTTATTGTTTTGGATGATGTGGCTAATTCAGAGCAGTTAGAATTCTTAGCTGGAAAGAATCCTCAGTTTGGTCCTGGAAGTAGAATAATTATAACAACCAGAGGAAAACATCTATTAATTACATATGGAGTGAATGAAATACGAGAGGCTGAGGAACTGAGTCTGAAAACTGCTATCAGGCTCTTTCAACAATATCATCACACAGAAGATGTCATGACGCTCTCCAGCTATGTTATAGATTATATTAAAGGCTTCCAACTATTTTGTCAAGATGCTGTAGGTTCTTTGTTATTTGGGAAGAGCAAACTTGAATGTGGAAGTGAATTAATAGATAACGAGTCTCAGTCAGACGAAGATGAACAACTTTCCAGATCCATACAGAAAGGCTTTATTTATACTTATCCTCCTTCTCTTGGAAATGGAAGTATCTACCAAGCCATTCTATTCCCTGTTTCGACCGGGTTCAAGATCTGTGCTGGTTGCGGTGCAGAGATTATTCAGAGGCGATATCTGAAATGCATAGGCAAAGTTTGGCATCCAGAGTGTTTTAGATGCCATGCTTGTGAGCAACCAATCTCTGACTATGAATTCTATCTCTGTAGAGAGTCACCTTATCATAAATCTTGCTACAAGGAGAAGTGTCGTCAAAAATGTGATGTTTGTGGGCATTTCTTTTGGGCAAACCCTGCTGGTCCTATGGAACATAGGGAGCATCCTTTCTGGGTCCAGAAGTACTGTCCTTCTCATGAGCATGATGGAACTCCTTCGTGCGTTAGCTGTGAGCGAAAGGAGCCATGGGGCACAAGATATACGACTCTCAACGACGGACGCAAGCTCTGCCTGGAGTGTCTAGACCATGCAATCATGGACACTCATGAATGCCAGCCCCTCTATCTTGATGTGAAAAACTTCTGTGAAAGTTTAAATATTGTAGTGGAGCAGCAGGTTCCATTACTCTTGGTTGAGAGACAGTCACCAAGTGAAGCCACAGGTGCAGAAGAGAGCACTGTCATAGACATGATCAGGGAGCCCTACAAACTGGTACCTGGTTGCAAATTAACCACATTTCACGTTTTGCACAGCCTTCCTAGGTTGCTGACTGGGGCGATCCTAGCTCACCTGATGATGCGTGTATGGCTGCGGCTTCGAGGTCACCGAGCTCTTACTCAACATGTTGAAGGAGGTATCTGTCAGGTGCTAGCTTACATGTGGTTGGACACCGAGCTCATGTCGGGATATGGCAATAATATTGCATCAACCTCATCATCCATGACACTTGCATCCACTTCATCAAGAAAGGGGGCGAGATCTAAATTTGAGAGGAAGCTTGGCGAGTTCCTGAAATACCTGATTGAATCAGATACTTCAGTGCATGGAGATGGATTCAGAGATGGTTACCAGTCAGTTCTTAGACATGGACTTCGAACAACCGTTGACCATATATTAATGACGGGAAGATTTCCATATACCCCTGATCCTGAATTTAGTTTAATAAGTTGTATTGGCGATCAAGCTAGTTGA 1851 0.4322 MLIKEIVGHISNRMICRSSKDTELAINGDDVLTIGIWGMGGIGKTILARAVFDHFSGQFEGCCFLENVREDSEKYGLLYLYRKLFSQLLGASSSSTGFSSMKARLRSKRVLIVLDDVANSEQLEFLAGKNPQFGPGSRIIITTRGKHLLITYGVNEIREAEELSLKTAIRLFQQYHHTEDVMTLSSYVIDYIKGFQLFCQDAVGSLLFGKSKLECGSELIDNESQSDEDEQLSRSIQKGFIYTYPPSLGNGSIYQAILFPVSTGFKICAGCGAEIIQRRYLKCIGKVWHPECFRCHACEQPISDYEFYLCRESPYHKSCYKEKCRQKCDVCGHFFWANPAGPMEHREHPFWVQKYCPSHEHDGTPSCVSCERKEPWGTRYTTLNDGRKLCLECLDHAIMDTHECQPLYLDVKNFCESLNIVVEQQVPLLLVERQSPSEATGAEESTVIDMIREPYKLVPGCKLTTFHVLHSLPRLLTGAILAHLMMRVWLRLRGHRALTQHVEGGICQVLAYMWLDTELMSGYGNNIASTSSSMTLASTSSRKGARSKFERKLGEFLKYLIESDTSVHGDGFRDGYQSVLRHGLRTTVDHILMTGRFPYTPDPEFSLISCIGDQAS* 617
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1972 616 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 262 293 - -
Vvi18g1972 616 Gene3D - 10 154 IPR027417 -
Vvi18g1972 616 ProSitePatterns LIM zinc-binding domain signature. 268 302 IPR001781 -
Vvi18g1972 616 PANTHER PROTEIN DA1-RELATED 2 221 444 IPR045218 -
Vvi18g1972 616 Pfam Protein DA1 443 593 IPR022087 -
Vvi18g1972 616 PRINTS Disease resistance protein signature 104 118 - -
Vvi18g1972 616 PRINTS Disease resistance protein signature 33 48 - -
Vvi18g1972 616 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 24 215 IPR027417 -
Vvi18g1972 616 ProSiteProfiles LIM domain profile. 266 326 IPR001781 -
Vvi18g1972 616 FunFam Uncharacterized protein 262 339 - -
Vvi18g1972 616 CDD LIM_DA1 268 320 - -
Vvi18g1972 616 Gene3D Cysteine Rich Protein 262 339 - -
Vvi18g1972 616 CDD LIM 295 370 - -
Vvi18g1972 616 Pfam NB-ARC domain 30 181 IPR002182 GO:0043531
Vvi18g1972 616 SMART lim_4 267 319 IPR001781 -
Vvi18g1972 616 Pfam LIM domain 268 322 IPR001781 -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Vvi18g1972 Vvi-Chr18 27319002 27320967 Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g1972 30 212 WRKY Transcription Factor Family AT5G45050 38.624 3.40e-27 115
       

Transcription factors information


Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Vvi18g1972 DA1-like 1.1e-46 CL0126
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1972 - - vvi:100246577 1253.04