Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1968 ATGGCACGAGGGAAAATTCAGATGAAGCGTATTGAGAACCCAGTACACAGGCAGGTTACCTTCTGCAAGCGCCGAGCAGGGCTTCTTAAGAAGGCTAAGGAGCTCTCTGTGTTGTGTGATGCTGAAATTGGGATTTTCATTTTCTCCGCCCATGGAAAGCTCTATGAACTAGCCACCAAAGGAACCATGCAAGGGCTTATTGAGAAGTACATGAAGTCTAGTTGCGGGTCTCAGGATGACCAAGCCAAAGAAGCACAACTTCTGGACACAAAAGAGGAGATTAACATGCTAAAGCATGAGATTGAATTACTTCAGAAAGGCCTCAGGTATATGTTGGGAGGTGGGGCTGGAACAATGACACTGGATGAACTACATATCTTTGAAAAACATCTTGAAATTTGGATCTATAACATCCGTTCAGCAAAGATGGAGATCATGTTTCAAGAAATCCAGCTATTGAAGAATAAGGAGGGAATACTGAAAGCAGCAAACAATTATCTCCAAGAAATGATAGACGACCAAACTGGAATTACCAACATTGCACCAATGATAAATCCATATCCACTAACTACACAAAATGAAATATTTCAAACTTAG 597 0.4137 MARGKIQMKRIENPVHRQVTFCKRRAGLLKKAKELSVLCDAEIGIFIFSAHGKLYELATKGTMQGLIEKYMKSSCGSQDDQAKEAQLLDTKEEINMLKHEIELLQKGLRYMLGGGAGTMTLDELHIFEKHLEIWIYNIRSAKMEIMFQEIQLLKNKEGILKAANNYLQEMIDDQTGITNIAPMINPYPLTTQNEIFQT* 199
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1968 198 Coils Coil 87 107 - -
Vvi18g1968 198 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 148 - -
Vvi18g1968 198 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Vvi18g1968 198 CDD MADS_MEF2_like 2 79 IPR033896 GO:0000977|GO:0045944
Vvi18g1968 198 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Vvi18g1968 198 SUPERFAMILY SRF-like 1 75 IPR036879 GO:0003677|GO:0046983
Vvi18g1968 198 Gene3D - 15 76 IPR036879 GO:0003677|GO:0046983
Vvi18g1968 198 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Vvi18g1968 198 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Vvi18g1968 198 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Vvi18g1968 198 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 56 IPR002100 GO:0003677|GO:0046983
Vvi18g1968 198 ProSiteProfiles K-box domain profile. 87 177 IPR002487 GO:0003700|GO:0005634|GO:0006355
Vvi18g1968 198 Pfam K-box region 88 171 IPR002487 GO:0003700|GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g1968 Vvi-Chr18 27268865 27284577 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g1968 1 197 MADS-box Gene Family AT1G71692 62.381 8.50e-78 230
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Vvi18g1968 K-box 4.8e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1968 - - vvi:100253426 395.586