Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1966 ATGACTTCTGCAAACACCCAAATCGTCTCTTATTCTCCTTCTTCTTCTTCGAAATCCACCCATCAATTCACTTATGAAGTCTTCTTGAGTTTCAGGGGAGAAGACACCCGCTATGGTTTCACCGATCATCTTTATGAGGCTTTCATTTCCCATGGAATTCGCACCTTTAGGGATGACGAAGAACTTGAGAGAGGAGGAATGATCGCGTCTGACATCCTGAATGCTATCGAAGAATCAAAGATTTTTGTTATCATTTTTTCGGAAAACTATGCTACCTCCAGGTGGTGTCTAGATGAACTCGTAAGGATCTTCGAGTGTACTGCAACAGAGAAGCGACTAATTCTACCAGTTTTCTACCATGTGGATCCATCAGAAGTGGGGGAACAGTCAGGAAGCTATGAAAAAGCATTTGTTGATCACGAAAAAGAAGCAGATGAGGAGAAAAAGGAGGAGATACAAAAGTGGAGGATTGCCTTGAGAAAAGCAGCCAATCTAGCTGGATATGATCTACAAAAATATGGATATGAGACAAGACTTATTAAGGAAATTATTGATGTCATCCTCAGAGAATTGAATTCCAAACTCTTACTACATGTTAGCAAGAACATAGTTGGAATGAATTTTCATTTGAAAGAATTGAAATCATTGATAAAAATTGAGTCAAATGATGTTCGCATGATTGGGATTTATGGGCTTGGTGGAATTGGTAAGACCACAATCGCCAAAGTTGTTTATAATAATATCTCACATCAATTTGAGAGTAGAATCTTCCTTGAAAATGTTAGAGAAAGATCTAAGGACCACTCAAGTTTACTTCAATTACAGAAAGAACTTCTTAATGGTGTCGCGAAGGGAAAATATCTAAAAATAAGTAATATTCACGAGGGGGTTAATGTGATAAGAAACAGATTTCTCTCAAAAAGGGTTCTTCTTATTCTTGATGATGTAGACAAATCGGAGCAATTACAATTCTTAGTTGGAGAGCATGGTTGGTTTGGTCCTAGAAGTAGAATCATCATAACATCTAGAGATCAACATTTGCTGGAAGAGTATGAAATGGATGCATCATATGAAGTTAAGGTGTTGGATTATGAGGAATCGATGCAACTTTTTTGTCTACATGCCTTTAAACAAAACATTCTTAGAAAAGATTATGTAGACCTCTCAAATGATGTGGTAAATTATGTTAATGGCCTGCCCTTAGCTCTTGAAATTTTGGGTTCTTTCCTTTTCAATAAAAGCAAGCTTGAGTGGGAAAGTACATTACAAAAACTAAAAAGAAAACCTAACATGAATGTCCAAAATGTGCTTAAGATAAGTTTTGATGGATTAGATGAGATAGAGAAAGAGATATTTCTTGATGTGGCATGCTTCTTCAAAGGATGGAATGAAACTGATGTTACAAGGCTGCTTGACCATGCAAATATTGTAATAAGAGTTCTTAGTGACAAGTGTCTAATAACACTTTCACATAATATCATATGGATGCATGATTTGGTACAAGAAATGGGTAGAGAAATTGTTCGACAGAATCATCCTAAAGAGCCTGGGAAATGGAGTAGATTGTGGGACCCTGAAGACATTTGCCTTGTATTGAGAAGAAAAATGGGGACGGAAGCAATTGAAGGGATATTTCTAGACATGTCTAGATCAAGAGAGATCTCATTTACTACTGAAGCTTTCAGAAGGATGGAGAGACTTAGATTATTCAAAGTTTATTGGAGTCATGGTTTTGTTAATTATATGGGAAAGGAGTATCAAAAGTTCCTCCTTCCTGAAGACTTTGAAATTCCGTCACATGATTTAAGATATCTTCATTGGGAAGGATACTCTTTGAAATCCTTGCCCTCAAATTTTCATGGAGAGAACCTCATTGAACTCAACTTGAAGCATAGCAATATAGAGCAGCTTTGGCAAGGGAAAAAGTATCTTGAAGAGTTAAAGATGTTGACTTTATCAGAATCTCAGCTGCTGAACGAAATACCACATTTCTCAAATATGCCAAATTTGGAGCAACTAAATATTGAACTTTGTGAAAAGTTGGATAAGGTTGACTCTTCGATTGGTATCCTGAAGAAGCTTACTTTATTGAATTTAAGAGGGTGCCAAAAGATTAGTAGTTTGCCAAGTACCATTCAATACTTGGTTTCTCTTAAAAGGCTTTATTTACATTCTATTGCTATTGACGAATTGCCCTCCTCAATACATCATCTCACCCAACTTCAAACACTATCTATTAGAGGATGCGAAAATTTGAGGAGTCTTCCAAGCAGCATTTGTAGGTTGAAATCCCTTGAAGAACTTGATCTCTATGGTTGTTCAAACTTAGGGACTTTTCCAGAAATCATGGAGAATATGGAATGGTTAACGGAGCTTAATTTAAGTGGCACGCATGTAAAAGGGCTTCCATCATCAATTGAATATCTAAATCATCTCACCCGTTTGGAGTTAAGATGTTGCAAAAATTTGAGGAGTCTTCCAAGCAGCATTTGGAGGTTGAAATCCCTTGAAGAACTTGATCTCTTTGGTTGTTCAAACTTGGAGACTTTTCCTGAAATCATGGAGGATATGGAATGCTTAATGGAGCTTAATTTAAGTAGAACGTGTATAAAAGAGCTTCCACCATCAATTGGATATCTAAATCATCTCACCTTTTTGGGGTTACAATGTTGCCAAAATTTGAGGAGTCTTCCAAGCAGCATTTGTAGGTTGAAATCCCTTGAAGAACTTGATCTCTATTATTGTTCAAACTTGGAGATTTTTCCAGAAATCATGGAGAATATGGAATGCTTAATTAAGCTTGATTTAAGTGGAACGCATATAAAAGAGCTTCCATCATCAATTGAATATCTAAATCATTTGACTTCAATGAGGTTGGTGGAGTCTAAAAACTTAAGGAGTCTTCCAAGCAGTATTTGTAGGTTGAAATTCCTTGAAAAACTTAATCTCTATGGTTGTTCACACTTGGAGACTTTCCCGGAAATCATGGAGGATATGGAATGCTTAAAGAAGCTTGATTTAAGTGGAACAAGTATAAAAAAGCTTCCATCATCAATTGGATATTTAAACCATCTTACTTCTTTTCGTTTGAGTTACTGCACAAACTTAAGGAGTCTTCCAAGCAGCATTGGTGGGTTGAAATCCCTTACAAAACTCTCTCTTAGTGGCCGTCCAAACAGGGTCACAGAGCAGTTGTTTCTAAGCAAAAACAATATTCATCACATACCTTCTGTTATTTCTCAACTTTGTAATCTGGAATGCCTTGATATTAGTCACTGCAAGATGCTTGAAGAAATTCCAGACCTTCCATCAAGTCTAAGAGAAATAGATGCACATGGTTGCACAGGCTTGGGAACTTTATCAAGTCCATCAAGTCTTCTATGGTCTTCTCTCCTCAAATGGTTCAAGAAAGTTGAGACTCCTTTTGAATGGGGAAGAATTAATCTAGGAAGTAATGGAATTCCCAGGTGGGTACTGCATCAGGAAGTGGGAAGCCAAATAAGAATAGAGCTTCCTATGAATTGTTATCATGATGACCACTTCCTTGGATTTGGATTTTTTTGTCTTTATGAACCAGTAGTGGATTTAAATTTATCTTTGAGATTTGATGAAGATTTAGATGAAAAAGCATATGCTTACAAGGGTGCTTCCTGGTGTGAATGCCACGACATTAATAGTAGTGAATCAGATGAAGTGTGGGTGGTGTACTGTCCTAAGATTGCTATTGGGGACAAGTTGCAGTCCAATCAATATAAGCATCTTCATGCCTCATTTGATGCTTGTATTATTGATTGTTCGAAGAATATTAAAAGTTGCGGGATCCATCTTGTATACTCTCAAGACTATCAGCAGAATCATATCTCATTGTTGGATTTTCGTGGCACCCAAGATGATGAAGACAACCATGTGCCCATGTTGAATTTTCCTAAGAATTCTGCTGACAACAGATCAACAGCAAAAGACATTAAGCGAAGCCATGATGATGCAGTACATGACCAAGCAGAGGAACCATACCATAAAAGATTGAGAGAATCCAACACCTATCTCAACTTTTAA 4056 0.3693 MTSANTQIVSYSPSSSSKSTHQFTYEVFLSFRGEDTRYGFTDHLYEAFISHGIRTFRDDEELERGGMIASDILNAIEESKIFVIIFSENYATSRWCLDELVRIFECTATEKRLILPVFYHVDPSEVGEQSGSYEKAFVDHEKEADEEKKEEIQKWRIALRKAANLAGYDLQKYGYETRLIKEIIDVILRELNSKLLLHVSKNIVGMNFHLKELKSLIKIESNDVRMIGIYGLGGIGKTTIAKVVYNNISHQFESRIFLENVRERSKDHSSLLQLQKELLNGVAKGKYLKISNIHEGVNVIRNRFLSKRVLLILDDVDKSEQLQFLVGEHGWFGPRSRIIITSRDQHLLEEYEMDASYEVKVLDYEESMQLFCLHAFKQNILRKDYVDLSNDVVNYVNGLPLALEILGSFLFNKSKLEWESTLQKLKRKPNMNVQNVLKISFDGLDEIEKEIFLDVACFFKGWNETDVTRLLDHANIVIRVLSDKCLITLSHNIIWMHDLVQEMGREIVRQNHPKEPGKWSRLWDPEDICLVLRRKMGTEAIEGIFLDMSRSREISFTTEAFRRMERLRLFKVYWSHGFVNYMGKEYQKFLLPEDFEIPSHDLRYLHWEGYSLKSLPSNFHGENLIELNLKHSNIEQLWQGKKYLEELKMLTLSESQLLNEIPHFSNMPNLEQLNIELCEKLDKVDSSIGILKKLTLLNLRGCQKISSLPSTIQYLVSLKRLYLHSIAIDELPSSIHHLTQLQTLSIRGCENLRSLPSSICRLKSLEELDLYGCSNLGTFPEIMENMEWLTELNLSGTHVKGLPSSIEYLNHLTRLELRCCKNLRSLPSSIWRLKSLEELDLFGCSNLETFPEIMEDMECLMELNLSRTCIKELPPSIGYLNHLTFLGLQCCQNLRSLPSSICRLKSLEELDLYYCSNLEIFPEIMENMECLIKLDLSGTHIKELPSSIEYLNHLTSMRLVESKNLRSLPSSICRLKFLEKLNLYGCSHLETFPEIMEDMECLKKLDLSGTSIKKLPSSIGYLNHLTSFRLSYCTNLRSLPSSIGGLKSLTKLSLSGRPNRVTEQLFLSKNNIHHIPSVISQLCNLECLDISHCKMLEEIPDLPSSLREIDAHGCTGLGTLSSPSSLLWSSLLKWFKKVETPFEWGRINLGSNGIPRWVLHQEVGSQIRIELPMNCYHDDHFLGFGFFCLYEPVVDLNLSLRFDEDLDEKAYAYKGASWCECHDINSSESDEVWVVYCPKIAIGDKLQSNQYKHLHASFDACIIDCSKNIKSCGIHLVYSQDYQQNHISLLDFRGTQDDEDNHVPMLNFPKNSADNRSTAKDIKRSHDDAVHDQAEEPYHKRLRESNTYLNF* 1352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1966 1351 PRINTS Disease resistance protein signature 226 241 - -
Vvi18g1966 1351 PRINTS Disease resistance protein signature 303 317 - -
Vvi18g1966 1351 PRINTS Disease resistance protein signature 760 776 - -
Vvi18g1966 1351 PRINTS Disease resistance protein signature 396 410 - -
Vvi18g1966 1351 SUPERFAMILY L domain-like 546 874 - -
Vvi18g1966 1351 Gene3D - 195 359 IPR027417 -
Vvi18g1966 1351 Gene3D Ribonuclease Inhibitor 960 1062 IPR032675 -
Vvi18g1966 1351 Gene3D Ribonuclease Inhibitor 542 779 IPR032675 -
Vvi18g1966 1351 SMART LRR_typ_2 738 762 IPR003591 -
Vvi18g1966 1351 SMART LRR_typ_2 857 880 IPR003591 -
Vvi18g1966 1351 SMART LRR_typ_2 1063 1082 IPR003591 -
Vvi18g1966 1351 SMART LRR_typ_2 715 737 IPR003591 -
Vvi18g1966 1351 SMART LRR_typ_2 999 1022 IPR003591 -
Vvi18g1966 1351 SMART LRR_typ_2 928 951 IPR003591 -
Vvi18g1966 1351 SMART LRR_typ_2 809 833 IPR003591 -
Vvi18g1966 1351 Pfam Leucine Rich Repeat 623 642 IPR011713 -
Vvi18g1966 1351 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 186 454 IPR027417 -
Vvi18g1966 1351 Pfam TIR domain 25 194 IPR000157 GO:0007165
Vvi18g1966 1351 FunFam Disease resistance protein (TIR-NBS-LRR class) 21 193 - -
Vvi18g1966 1351 MobiDBLite consensus disorder prediction 1316 1338 - -
Vvi18g1966 1351 SUPERFAMILY "Winged helix" DNA-binding domain 433 532 IPR036390 -
Vvi18g1966 1351 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 25 757 IPR044974 GO:0006952
Vvi18g1966 1351 SMART till_3 24 165 IPR000157 GO:0007165
Vvi18g1966 1351 MobiDBLite consensus disorder prediction 1305 1338 - -
Vvi18g1966 1351 SUPERFAMILY L domain-like 847 1136 - -
Vvi18g1966 1351 Pfam NB-ARC domain 215 437 IPR002182 GO:0043531
Vvi18g1966 1351 Pfam C-JID domain 1151 1282 IPR045344 -
Vvi18g1966 1351 Gene3D - 361 445 IPR042197 -
Vvi18g1966 1351 ProSiteProfiles TIR domain profile. 23 191 IPR000157 GO:0007165
Vvi18g1966 1351 Gene3D Ribonuclease Inhibitor 780 959 IPR032675 -
Vvi18g1966 1351 Gene3D Ribonuclease Inhibitor 1063 1155 IPR032675 -
Vvi18g1966 1351 Gene3D - 18 194 IPR035897 -
Vvi18g1966 1351 SUPERFAMILY Toll/Interleukin receptor TIR domain 14 168 IPR035897 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g1966 Vvi-Chr18 27244856 27249772 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g1966 812 963 WRKY Transcription Factor Family AT4G12020 46.053 4.58e-24 108
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1966 - - vvi:100243179 2679.05