Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1951 ATGGATAGCAACATTGATTTATTAAAGCGTTTGTTGGAGAATGGAGGTAACCCAAACTCAAGGAACTATGACCTACAAACACCTCTACATTTTGCAGCAGCAGAAGGTTTGCACCTTGTGGCAAATATCTTGATCAAACTTGGAGCAGATGTTCTATCCAAAGACAGGGTTCTTGGAAGCTCTCAGGTAGGCAGTCTTTGTGGGCAGGATACAACCGGTTGTATTCAGCGTGATGAGACCTGCCATGAGTCACCCAAGGCTGCAACTCCGAAAGGGCAGCAAGTGCTGAAGCAAAGGTTCAGTTCTCTAAGGAATACAGGACATGCATGA 330 0.4545 MDSNIDLLKRLLENGGNPNSRNYDLQTPLHFAAAEGLHLVANILIKLGADVLSKDRVLGSSQVGSLCGQDTTGCIQRDETCHESPKAATPKGQQVLKQRFSSLRNTGHA* 110
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1951 109 ProSiteProfiles Ankyrin repeat profile. 24 56 IPR002110 GO:0005515
Vvi18g1951 109 SUPERFAMILY Ankyrin repeat 4 55 IPR036770 -
Vvi18g1951 109 ProSiteProfiles Ankyrin repeat region circular profile. 24 56 - -
Vvi18g1951 109 Pfam Ankyrin repeats (many copies) 2 36 IPR002110 GO:0005515
Vvi18g1951 109 MobiDBLite consensus disorder prediction 94 109 - -
Vvi18g1951 109 MobiDBLite consensus disorder prediction 84 109 - -
Vvi18g1951 109 Gene3D - 1 60 IPR036770 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g1951 Vvi-Chr18 26948961 26954668 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g1951 6 56 Ion Channels AT5G37500 62.745 2.29e-16 71.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1951 K21867 - vri:117906358 108.612