Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1950 ATGGCTCTGGTTTTGCATGCTGGGAACACGAATAAAAATGCCTTCAAGGCACTCATTGCTGCTGAGTACAGCGGTGTCAAAGTTGAGCTTGTCAAGAATTTTGAGATGGGTGTATCAAATAAAAGTCCTGAATTTCTCAAGATGAACCCTATTGGAAAGGTTCCTGTCTTGGAAACACCTGATGGACCTGTATTTGAGAGCAATGCCATTGCGCGCTATGTTACTCGATTGAAGGCTGACAATCCTCTTTATGGCTCCACCTTGATTGAATATGCTCATATTGAGCAATGGATTGATTTTGGATCATTGGAGATTGACGCCAATATTTTGCGTTGGTTCATCCCAAGAATTGGTTTTGCTGTATACCTTCCTCCGGCTGAGGAAGCTGCAATTTCTGCATTGAAGAGAGCGTTAGGTGCCTTGAACACTCATCTTGCTTCAAACACTTACCTGGTGGGACACTCTGTGACATTGGCTGATATTATTATGACATGCAACTTGGTTATGGGATTTAGCCGGGTCATGACAAAGAGCTTTACCTCGGAGTTCCCACATGTTGAGAGATATTTCTGGACCATGGTTAATCAGCCAAATTTCCGCAAGATATTGGGTGAGGTGAAACAGGCAGAATCTGTTCCACCTGTTCAGTCAGCAAAGAAGCCTTCACAACCAAAAGAACCTAAGCACAAGGATGAGCCAAAAAAAGAGGCCAAAAAGGAGGCCAAAAAAGAACCAGTAAAGCCTAAAGTGGCAGAGGCTGCTGAGGAGGAAGAGGCACCCAAGCCAAAGCCAAAGAACCCTCTTGATCTGTTGCCTCCAAGTAAGATGGTATTGGATGACTGGAAGAGGCTTTATTCAAACACCAAGACCAACTTCCGTGAGGTTGCTATCAAAGGATTTTGGGACATGTATGATCCTGAGGGCTACTCTCTCTGGTTCTGCGATTACAAGTACAATGATGAGAATACTGTCTCATTTGTGACTTTGAACAAGGTGACTGGTTTCCTACAACGTATGGATTTGGCTCGTAAATATGCATTTGGGAAGATGCTGATAGTGGGATCTGAGGCACCATTCAAGGTGAAGGGGCTGTGGCTCTTCAGGGGGCAAGAAATTCCTCAATTTGTAATTGATGAATGCTATGACATGGAGCTATACGAGTGGAAGAAGGTTGACCTCAGTGATGAAGCTCAGAAGGAGCGTGTCAACCAGATGATTGAAGACCAGGAGCCATTTGAGGGAGAGGCACTACTGGATGCCAAGTGCTTCAAGTGA 1275 0.4463 MALVLHAGNTNKNAFKALIAAEYSGVKVELVKNFEMGVSNKSPEFLKMNPIGKVPVLETPDGPVFESNAIARYVTRLKADNPLYGSTLIEYAHIEQWIDFGSLEIDANILRWFIPRIGFAVYLPPAEEAAISALKRALGALNTHLASNTYLVGHSVTLADIIMTCNLVMGFSRVMTKSFTSEFPHVERYFWTMVNQPNFRKILGEVKQAESVPPVQSAKKPSQPKEPKHKDEPKKEAKKEAKKEPVKPKVAEAAEEEEAPKPKPKNPLDLLPPSKMVLDDWKRLYSNTKTNFREVAIKGFWDMYDPEGYSLWFCDYKYNDENTVSFVTLNKVTGFLQRMDLARKYAFGKMLIVGSEAPFKVKGLWLFRGQEIPQFVIDECYDMELYEWKKVDLSDEAQKERVNQMIEDQEPFEGEALLDAKCFK* 425
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1950 424 FunFam Elongation factor 1B gamma 1 74 - -
Vvi18g1950 424 Pfam Glutathione S-transferase, C-terminal domain 117 197 IPR004046 -
Vvi18g1950 424 SUPERFAMILY Thioredoxin-like 2 85 IPR036249 -
Vvi18g1950 424 SFLD Main (cytGST) 4 193 - -
Vvi18g1950 424 Pfam Elongation factor 1 gamma, conserved domain 263 371 IPR001662 GO:0003746|GO:0006414
Vvi18g1950 424 CDD GST_C_EF1Bgamma_like 90 210 - -
Vvi18g1950 424 Gene3D Translation elongation factor EF1B, gamma chain, conserved domain 264 424 IPR036433 GO:0003746|GO:0006414
Vvi18g1950 424 PANTHER ELONGATION FACTOR 1-GAMMA 1-RELATED 1 424 IPR044628 GO:0004364
Vvi18g1950 424 MobiDBLite consensus disorder prediction 210 271 - -
Vvi18g1950 424 Gene3D Glutaredoxin 1 74 - -
Vvi18g1950 424 ProSiteProfiles Elongation factor 1 (EF-1) gamma C-terminal domain profile. 264 424 IPR001662 GO:0003746|GO:0006414
Vvi18g1950 424 ProSiteProfiles Soluble glutathione S-transferase C-terminal domain profile. 87 215 IPR010987 -
Vvi18g1950 424 MobiDBLite consensus disorder prediction 222 264 - -
Vvi18g1950 424 SFLD Glutathione Transferase (cytosolic) 4 193 IPR040079 -
Vvi18g1950 424 Pfam Glutathione S-transferase, N-terminal domain 9 75 IPR004045 -
Vvi18g1950 424 FunFam Elongation factor 1-gamma 1 264 424 - -
Vvi18g1950 424 ProSiteProfiles Soluble glutathione S-transferase N-terminal domain profile. 1 82 IPR004045 -
Vvi18g1950 424 SUPERFAMILY GST C-terminal domain-like 80 214 IPR036282 -
Vvi18g1950 424 Gene3D - 80 217 - -
Vvi18g1950 424 CDD GST_N_EF1Bgamma 3 77 - -
Vvi18g1950 424 FunFam Elongation factor 1 gamma 80 216 - -
Vvi18g1950 424 SUPERFAMILY eEF1-gamma domain 264 424 IPR036433 GO:0003746|GO:0006414
Vvi18g1950 424 SMART EF1G_2 263 371 IPR001662 GO:0003746|GO:0006414
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g1950 Vvi-Chr18 26917882 26937946 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g1950 1 424 Eukaryotic Initiation Factors Gene Family AT1G57720 77.594 0.0 649
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1950 K03233 - vvi:100246571 768.074