Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1948 ATGGGGAGAGGAAAGATCGAGATCAAGAGGATCGAAAACACGACCAACCGTCAGGTCACATTCTGCAAGCGAAGGAATGGGCTTTTGAAGAAGGCTTATGAATTATCAGTGCTATGTGATGCAGAAGTTGCCCTCATCGTCTTCTCCAGCCGCGGTCGAGTCTATGAGTACTCAAACAACAACATAAAATCAACCATAGATAGGTACAAGAAGGCCAGCTCAGATAGTACAAATGGAGGCTCTACCATGGAGATCAATGCCCAATACTACCAGCAAGAATCAGCAAAGCTGCGCCAGCAAATACAGATGCTGCAGAATTCTAACAGGCACTTAATGGGTGATTCCTTGGCTTCCTTGACTGTGAAGGAGCTAAAGCAGCTCGAGAACAGGCTTGAACGAGGCATCACAAGAATCAGGTCGAAGAAGCATGAGTTGCTGTTGGCTGAGATTGAGTACTTGCAGAAAAGGGAAATTGAGCTGGAAAATGAAAGCGTATATCTCCGAACCAAGATTGCAGAAGTGGAGAGGCTTCAGCAAGCAAACATGGTATCAACACATGAGTTCAATGCCATCCAGGCATTAGTTTCTCGCAATTTCTTTCAGCCCAATATGATTGAGGGTGGATCCACAGGCTACCCACTTCCTGATAAGAAGGTCCTCCATCTCGGGTAA 672 0.4598 MGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRVYEYSNNNIKSTIDRYKKASSDSTNGGSTMEINAQYYQQESAKLRQQIQMLQNSNRHLMGDSLASLTVKELKQLENRLERGITRIRSKKHELLLAEIEYLQKREIELENESVYLRTKIAEVERLQQANMVSTHEFNAIQALVSRNFFQPNMIEGGSTGYPLPDKKVLHLG* 224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1948 223 CDD MADS_MEF2_like 2 76 IPR033896 GO:0000977|GO:0045944
Vvi18g1948 223 Coils Coil 124 163 - -
Vvi18g1948 223 ProSiteProfiles K-box domain profile. 87 177 IPR002487 GO:0003700|GO:0005634|GO:0006355
Vvi18g1948 223 Gene3D - 13 111 IPR036879 GO:0003677|GO:0046983
Vvi18g1948 223 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Vvi18g1948 223 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Vvi18g1948 223 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 169 - -
Vvi18g1948 223 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Vvi18g1948 223 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Vvi18g1948 223 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Vvi18g1948 223 Coils Coil 87 107 - -
Vvi18g1948 223 FunFam agamous-like MADS-box protein AGL11 13 96 - -
Vvi18g1948 223 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Vvi18g1948 223 SUPERFAMILY SRF-like 2 74 IPR036879 GO:0003677|GO:0046983
Vvi18g1948 223 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Vvi18g1948 223 Pfam K-box region 84 171 IPR002487 GO:0003700|GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g1948 Vvi-Chr18 26888876 26895228 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g1948 1 223 MADS-box Gene Family AT4G09960 74.783 3.70e-120 339
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Vvi18g1948 K-box 2.7e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1948 K09264 - vvi:100232870 429.098