Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1933 ATGGCTTCGACCAGCACCCATAGAGCCTCTTCTACTTCTTCTAATCCTCGTAGTTATGATGTGTTCTTGAGTTTTAGAGGGGATGACACTCGTAAGAATTTCACTGATCATCTCTATACCAGTTTGGTTACACGTGGAATTCATACGTTTAGAGATGATGAAGAGCTTGAGAAAGGAGGAGATATTGCGGCTGATCTCTCAAGAGCTATAGAAGAATCAAGGATTTTCATTATTATTTTCTCAAAGAATTATGCCTACTCCAGATGGTGTTTGAATGAACTTCTAAAGATCATTGACTGTGTGACCCAAAAAGAATCAATGGTTGTACCAATTTTCTATCATGTGCCTCCATCAGATGTACGAAATCAATCGGGAAGCTTTGATTATGCATTCACCTTCCATGAAAAAGATGCAGATCAAAAGAAGAAGGAGATGGTAGAAAAGTGGAGGACTGCCTTGACGAAAGCAGCCAATATATCTGGATGGCACGTGGAAAACCAGTATGAGTCAGAGGTTATTGGACAAATCATTGAGAAAATCCTTCAAAAATTGGGACCTACACATTTATATGTTGGCAAGAACATTGTTGGAATGGATTATCATTTGGAACAACTCAAAGCATTAATAAATATTGAGTTGAATGATGTTTGTATAATTGGAATTTATGGAATTGGTGGAATTGGCAAGACTACCATTGCCAAAGCAATTTACAATGAAATTTCATGTAAATTTGAGGGTAGTAGCTTTCTTGCAGATGTTCGAGAGCAGTCCAAAGATAATGCTGGTCTGCTTAGATTACAAAATCAACTTCTTGATGATACCTTAGCAGGAACATATAAAAAAAAAAGTAGTAGCATTTATGGAGCAACCCATGAGATAAGGGACAAGCTTCGGTTGAAAAGAGTTCTTGTTATTCTTGATGATGTGGATGGGCGAAGGCAATTAGACTACTTAGCTGGAGAATGTGAATGGTTTGGTTCAGGAAGTAGAATTATCATAACAACTAGGCATAAAGATTTGGTAGCTATAGACGGAGCAAATAAATCATATGAGCCTAGAAAGTTAAATGATGAAGAAGCCATCAAGCTTTTTAGTTTATATGCCTTTAAACAAAATGTTCCAAGAGAAAATTATAAAAATCTTTGTGAGAATGCAGTAAAGTATGCCCAAGGCCTTCCCCTAGCACTTGCAGTTTTGGGTTCTACCTTATCTAGCAAGAGAGGAATACGCGAATGGGAAAGTGAATTGCGTAAATTGGAAAAAGAACCTAACAGGGAAATTTATAATGTACTTAGAACAAGTTTTGATGGATTAAGTCGTGTAGAAGGGGAAATATTCCTTGACATTGCTTGTTTTTTTAAAGGAAAAGATAGAGATTTTGTTTCAAGAATATTGGATGATGCTGAAGGTGAAATAAGTAATCTTTGTGAAAGATGTCTTATAACCATTTTAGACAACAAGATATATATGCATGACTTAATACAACAAATGGGTTGGGAAGTTGTTCGCGAAAAGTGTCAAAACGAGCCCGGGGAACAGAGCAGGTTATGGGATCTTGATGATGTCTCTAGTGTATTAACTAGAAATGCGGGGACAAAGGCAATTGAAGGATTATTCATGGATATGTCTGCACAACAAGAAATTCAATTTACAACTGAAACCTTCACAAAGATGAATAAACTTAGATTGCTCAAAATTCATCAAGATGCTAAATATGATCATATTAAGGAAATTGATGGAGATGTGCATTTTCCTCAAGTGGCCCTTCCTGAAGACTTGAAATTGCCTTCTTTTGAGTTAAGGTATCTCCATTGGGATGGATATTCTTTAAAATACTTGCCACCAAATTTTCATCCGAAGAATCTTGTTGAGCTCAACTTGCGGTGTAGCAACATAAAACAACTTTGGGAAGGAAATAAGGTTCTTAAAAAGTTAAAGGTCATCAATCTTAATCATTCACAACGTCTCATGGAGTTCCCAAGCTTCTCAATGATGCCAAATTTGGAGATACTAACCCTTGAAGGGTGCATAAGCCTTAAGCGTCTTCCAATGGACATTGATAGGTTGCAACACCTTCAGACTCTCTCTTGCCATGATTGTTCAAAACTAGAGTATTTCCCAGAGATCAAGTACACAATGAAAAATCTCAAAAAGCTTGATTTATATGGAACAGCAATAGAGAAGCTACCATCATCATCAATTGAACATTTGGAAGGGCTTGAATATTTGAATTTAGCACATTGCAAAAATCTTGTGATTCTTCCTGAGAACATTTGTAGTTTGAGATTTCTTAAGTTTCTAAATGTCAATGCATGTTCAAAACTCCACAGGTTGATGGAGAGCCTAGAGAGCCTGCAATGCTTAGAGGAGCTTTATTTAGGTTGGCTTAATTGTGAATTGCCTACTTTGTCAGGTTTATCCTCCTTGAGAGTATTACATCTAAATGGCTCTTGTATAACTCCAAGAGTAATCCGCAGCCATGAGTTCTTGTCCTTATTGGAGGAACTCAGTCTCAGTGATTGCGAAGTAATGGAAGGGGCCCTGGATCATATTTTTCATCTATCATCGTTGAAAGAATTAGATCTAAGTAACTGCTATCTAATGAAAGAAGGAATCCCCGATGATATTTATCGTCTATCATCATTGCAAGCATTAGATCTCAGTGGAACTAATATCCATAAAATGCCTGCTAGCATCCACCATCTTTCTAAGCTGAAATTCCTATGGTTGGGTCACTGCAAGCAGCTTCAAGGAAGTCTAAAGCTTCCATCGAGTGTACGATTTTTAGATGGCCATGATAGCTTCAAATCATTGTCATGGCAGAGGTGGCTATGGGGTTTCCTATTCAATTGCTTTAAATCAGAAATTCAGGATGTTGAGTGTAGGGGTGGTTGGCATGACATACAATTTGGTCAATCTGGCTTTTTTGGCAAGGGAATTAGTATTGTAATTCCTAGAATGCCACATTGGATAAGTTATCAGAATGTAGGAAATGAGATAAAAATTGAACTTCCTATGGACTGGTACGAGGACAATGACTTTTTGGGATTTGCTTTATGTGCCGTTTATGTTCCACTTGAGAACACACTTGGGGATGTACCTACAATGTCTTATAGATTAAGTTGTCATTTGAGTTTGTGTGGTGATCAATTTAGGGATTCTCTCTCCTTTTATTCTGTCTGTGAATGCTATTGTAGAGGTGAATCAAGCAATCAAGTGTGGATGACCTGCTATCCTCAGATTGCCATTCAGGAGAAGCATCGCTCCAATAAGTGGAGGCAGTTCGCAGCTTCATTTGTTGGCTATGTCACTGGATCCTTTAAAGTCATAAAGTGTGGGGTCACACTTATATATGAACAGAAGAGTAAGCTTCTTGGATCAGTTGAGAATGTATCTGTTACTTGCTCAGAGTGTCAAACGAATGGGGAGCATGAAGAGAAGCTATGTTTAGGGGAAACTGCTATCAATGAACTACTCAATATTGAGTGCCTCTCCGGAATTCAAAACTTATGTTTGCGGAACTGCAAAAGGCTTGAGAGTCTTCCAAGTGACATTTATAAGTTGAAATCCCTTACAACTTTTTCTTGCTCTGGCTGTTCAAAACTGCAAAGCTTTCCAGAAATTACAGAAGATATGAAAATTTTAAGAGAGCTTCGTTTAGATGGAACTTCTTTAAAAGAACTACCATCATCAATTCAACATCTACAAGGGCTTAAATATTTGGATCTAGAGAATTGCAAAAACCTTCTGAATATTCCAGACAACATTTGTAACTTAAGATCTCTTGAAACTCTCATTGTCTCTGGTTGTTCAAAACTCAACAAACTACCCAAAAACTTGGGGAGCCTTACACAGCTACGGTTGCTTTGTGCTGCACGTTTAGATTCAATGAGTTGTCAATTGCCTTCTTTCTCAGACCTACGCTTCTTAAAAATATTAAATCTAGATCGGTCAAATTTAGTGCATGGAGCAATTCGGAGTGATATTTCCATCTTATACTCATTGGAAGAAGTAGATCTAAGCTACTGCAATCTAGCTGAAGGAGGAATCCCCAGTGAAATTTGCTACCTATCATCACTGCAAGCATTATATCTGAAAGGGAACCATTTTAGTAGCATACCTTCTGGGATCGGTCAGCTTTCTAAGCTGAAAATCCTTGACTTGAGCCACTGTGAGATGCTTCAACAAATTCCAGAGCTTCCATCAAGTTTGCGAGTTTTGGATGCCCATGGATGCATTCGGCTGGAAAGTTTATCTAGTCCACAGAGTCTACTTTTGTCTTCTCTATTCAAATGCTTCAAATCAGAAATTCAGGAGTTGGAATGCAGGATGGTTTTGTCTAGCCTCCTTCTGCAAGGATTTTTCTATCATGGAGTCAATATTGTAATTTCTGAAAGTAGTGGAATCCTGGAGGGGACATGGCATCAGGGATCTCAAGTAACAATGGAGCTTCCCTGGAATTGGTATGAAAATAACAACTTCTTGGGATTTGCTTTATGCTCTGCTTATTCTTCACTTGATAATGAATCCGAGGATGGAGATGGGGATGGATATCCTTGTACTTTCAAATGTTGTTTGACTTTCTGGGCTAGTGAATCTGGATGGCAGTGTGAGCTCCCATTAAAATCCAGATGTACATGCTACAATGATGGTGGTGTATCAGATCAAGTATGGGTGATGTATTATCCCAAGGGTGCTTTTAGAATGAATCCTGTCTCAGTTAAACATGGGTCCTTGAGTGCTTCATTTCATGGTTATATTCATGGTAGAGCAGTCAAGGTGAAAAAATGTGCAGTGCAATTTCTATTCAGCCAAGGATCATCGGTACAAGATGCTCATGTTATCAAGGGATGCAGTGATTACACACAAGGGATCATCGGTACAAGACCATAA 4893 0.3814 MASTSTHRASSTSSNPRSYDVFLSFRGDDTRKNFTDHLYTSLVTRGIHTFRDDEELEKGGDIAADLSRAIEESRIFIIIFSKNYAYSRWCLNELLKIIDCVTQKESMVVPIFYHVPPSDVRNQSGSFDYAFTFHEKDADQKKKEMVEKWRTALTKAANISGWHVENQYESEVIGQIIEKILQKLGPTHLYVGKNIVGMDYHLEQLKALINIELNDVCIIGIYGIGGIGKTTIAKAIYNEISCKFEGSSFLADVREQSKDNAGLLRLQNQLLDDTLAGTYKKKSSSIYGATHEIRDKLRLKRVLVILDDVDGRRQLDYLAGECEWFGSGSRIIITTRHKDLVAIDGANKSYEPRKLNDEEAIKLFSLYAFKQNVPRENYKNLCENAVKYAQGLPLALAVLGSTLSSKRGIREWESELRKLEKEPNREIYNVLRTSFDGLSRVEGEIFLDIACFFKGKDRDFVSRILDDAEGEISNLCERCLITILDNKIYMHDLIQQMGWEVVREKCQNEPGEQSRLWDLDDVSSVLTRNAGTKAIEGLFMDMSAQQEIQFTTETFTKMNKLRLLKIHQDAKYDHIKEIDGDVHFPQVALPEDLKLPSFELRYLHWDGYSLKYLPPNFHPKNLVELNLRCSNIKQLWEGNKVLKKLKVINLNHSQRLMEFPSFSMMPNLEILTLEGCISLKRLPMDIDRLQHLQTLSCHDCSKLEYFPEIKYTMKNLKKLDLYGTAIEKLPSSSIEHLEGLEYLNLAHCKNLVILPENICSLRFLKFLNVNACSKLHRLMESLESLQCLEELYLGWLNCELPTLSGLSSLRVLHLNGSCITPRVIRSHEFLSLLEELSLSDCEVMEGALDHIFHLSSLKELDLSNCYLMKEGIPDDIYRLSSLQALDLSGTNIHKMPASIHHLSKLKFLWLGHCKQLQGSLKLPSSVRFLDGHDSFKSLSWQRWLWGFLFNCFKSEIQDVECRGGWHDIQFGQSGFFGKGISIVIPRMPHWISYQNVGNEIKIELPMDWYEDNDFLGFALCAVYVPLENTLGDVPTMSYRLSCHLSLCGDQFRDSLSFYSVCECYCRGESSNQVWMTCYPQIAIQEKHRSNKWRQFAASFVGYVTGSFKVIKCGVTLIYEQKSKLLGSVENVSVTCSECQTNGEHEEKLCLGETAINELLNIECLSGIQNLCLRNCKRLESLPSDIYKLKSLTTFSCSGCSKLQSFPEITEDMKILRELRLDGTSLKELPSSIQHLQGLKYLDLENCKNLLNIPDNICNLRSLETLIVSGCSKLNKLPKNLGSLTQLRLLCAARLDSMSCQLPSFSDLRFLKILNLDRSNLVHGAIRSDISILYSLEEVDLSYCNLAEGGIPSEICYLSSLQALYLKGNHFSSIPSGIGQLSKLKILDLSHCEMLQQIPELPSSLRVLDAHGCIRLESLSSPQSLLLSSLFKCFKSEIQELECRMVLSSLLLQGFFYHGVNIVISESSGILEGTWHQGSQVTMELPWNWYENNNFLGFALCSAYSSLDNESEDGDGDGYPCTFKCCLTFWASESGWQCELPLKSRCTCYNDGGVSDQVWVMYYPKGAFRMNPVSVKHGSLSASFHGYIHGRAVKVKKCAVQFLFSQGSSVQDAHVIKGCSDYTQGIIGTRP* 1631
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1933 1630 SMART LRR_typ_2 854 879 IPR003591 -
Vvi18g1933 1630 SMART LRR_typ_2 1357 1380 IPR003591 -
Vvi18g1933 1630 SMART LRR_typ_2 737 761 IPR003591 -
Vvi18g1933 1630 SMART LRR_typ_2 1212 1234 IPR003591 -
Vvi18g1933 1630 SMART LRR_typ_2 806 831 IPR003591 -
Vvi18g1933 1630 SMART LRR_typ_2 713 736 IPR003591 -
Vvi18g1933 1630 SMART LRR_typ_2 1259 1283 IPR003591 -
Vvi18g1933 1630 Pfam TIR domain 19 187 IPR000157 GO:0007165
Vvi18g1933 1630 SUPERFAMILY Toll/Interleukin receptor TIR domain 9 162 IPR035897 -
Vvi18g1933 1630 Gene3D Ribonuclease Inhibitor 540 711 IPR032675 -
Vvi18g1933 1630 Gene3D Ribonuclease Inhibitor 1127 1319 IPR032675 -
Vvi18g1933 1630 Gene3D Ribonuclease Inhibitor 712 937 IPR032675 -
Vvi18g1933 1630 Gene3D - 190 347 IPR027417 -
Vvi18g1933 1630 SUPERFAMILY L domain-like 490 920 - -
Vvi18g1933 1630 ProSiteProfiles TIR domain profile. 17 184 IPR000157 GO:0007165
Vvi18g1933 1630 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 19 772 IPR044974 GO:0006952
Vvi18g1933 1630 FunFam Disease resistance protein (TIR-NBS-LRR class) 15 185 - -
Vvi18g1933 1630 Gene3D - 16 188 IPR035897 -
Vvi18g1933 1630 PRINTS Disease resistance protein signature 389 403 - -
Vvi18g1933 1630 PRINTS Disease resistance protein signature 218 233 - -
Vvi18g1933 1630 PRINTS Disease resistance protein signature 296 310 - -
Vvi18g1933 1630 PRINTS Disease resistance protein signature 852 868 - -
Vvi18g1933 1630 SMART till_3 18 159 IPR000157 GO:0007165
Vvi18g1933 1630 Gene3D - 354 439 IPR042197 -
Vvi18g1933 1630 Gene3D Ribonuclease Inhibitor 1320 1447 IPR032675 -
Vvi18g1933 1630 Pfam NB-ARC domain 203 425 IPR002182 GO:0043531
Vvi18g1933 1630 SUPERFAMILY L domain-like 1130 1429 - -
Vvi18g1933 1630 Pfam Leucine Rich Repeat 621 640 IPR011713 -
Vvi18g1933 1630 Pfam C-JID domain 1476 1605 IPR045344 -
Vvi18g1933 1630 Pfam C-JID domain 987 1121 IPR045344 -
Vvi18g1933 1630 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 188 449 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g1933 Vvi-Chr18 26577653 26585743 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g1933 14 876 WRKY Transcription Factor Family AT4G12020 31.843 3.50e-101 358
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1933 - - vvi:100255078 3239.51