Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1922 ATGGAGTGCCAGAAAGAAAAGGGACAAATAGTTTATCCCGTTTTCTATCACGTACGGCCGTGTGAAGTCAGGAACCAGTATGGGACTTATGGAGAAGAATTTAAGAAACACGAGAGCAATGCGGACGAGGAGAAGAAGAAGAAAATAGGGGAGTGGAGGACTGCCTTAAGGAAAGCCGGTGATTTGAGTGGATTTAGTCTGCGGGATAGATCTGAGGCAGAGTTTATTGAAGAAATCATTGGTGAGATTCGAAGATTAATTCCTAAGTGGGTACATGTTGGTGAGAATATTGTTGGAATGGATGAAAATTTGAAAAAAGTGAAGTTATTGATAGATGCCCAATCAAATAAAGTGAGTATGGTTGGGATTTATGGGACTGGTGGGATTGGTAAAACTACCATCGCCAAGGTTGTTTACAATGATATGTTAGATCAATTTAAATGTCACAGCTTTCTTGAAAATGTGAGAGAGAAATATGAAGATAAAGGTGATTTGCTTCAATTACAAAAAGAACTTCTTTGTGATATCCTAATGGAGAAAAATCTGGTGTTAAGGAATATTGATGAAGGATTTAAAAAGATAAAGAGTAAGCGTCACTCTGAAAAGGTTCTTATTGTTCTTGATGATGTAGGTTGTGAAGAACAATTAAAATTCTTAGCTCCTAATTCTGAATGTTTTCATCCAGGAAGCATAATCATTGTGACCACGAGAAATAAGCGTTGCCTAGATGTATATGACTCGTATTCATCATATGAGGCTAAGAGAATGGCAGACAAGCAAGCTGAGGAACTCTTTTGTTGGAATGCCTTCAAGCAAGACCATCCCATAGAAAATTTTGTGGGCCTCTCTAATCGTATACTGGATTATGCTGACGGCCTTCCATTGGCTCTTGTAGTTTTGGGTTCTTTTCTCTTTCAAAGGCCTATGGATGAATGGGAAAGCACATTGGATGAACTCAAAACAATCCCTCCCGAGAATATTCAAAAGGTACTCCAGATAAGTTATGATGGACTAAGTGATGAACGCAAGAAGTTGTTTCTTTATATTGCATGCTTCTTCAAAGATGAGGATGAAAAAATGGCAACAAGAATACTAGAAAGTTGCAAATTACATCCCGCTATTGGACTAAGAGTTCTTCATGAGAGGTGTCTTATTTCTATAGAGGACAACACTATAAGGATGCATGACTTGTTACAAGAAATGGGTTGGGCAATTGTTTGCAATGATCCAGAACGTCCAGGAAAATGGAGCAGATTGTGCGAATTACAGGATATTGAAAGTGTATTATCACAAAATGAGTGGACAAAAAACATTGAGGGGATTTTCACAAGTCAGTCTCGCCATACAGGAAAACATATACAACTTACTACTGAAGTTTTCAGAAATATGAATCAACTTAGATTGCTCAAAGTCGAATTCAATCAGATCGTGCAGCTTTCCCAAGACTTTGAATTGCCTTGTCATGATTTAGTATATTTTCATTGGGATTACTACCCTTTAGAATATTTGCCATCAAATTTTCATACAGACAATCTTGTTGAACTCAACCTCTGGTGTAGCCGCATAAAACATCTTTGGGAAGGAAATATGCCTGCTAAAAAGTTAAAAGTCATTGATCTTAGTTATTCCATGCATCTGGTTGACATTTCAAGCATCTCAAGTATGCCAAATTTGGAGACTCTAACTCTAAAAGGGTGCACGAGACTTAAGAGTCTTCCAAGGAACTTTCCTAAGTTGGAATGCCTTCAAACACTCTCTTGTTGTGGCTGTTCAAACTTAGAGAGTTTTCCGAAGATCGAGGAAGAAATGAGAAGTCTAAGAAAGCTTAATTTAAGTCAAACAGGTATAATGGGATTACCATCATCAATTAGCAAGCTAAATGGGCTTAAAGAGTTGGACTTAAGTAGTTGCAAAAAGCTTTCGAGTCTTCCGGACAGTATTTATAGTTTGAGCTCTCTTCAAACTCTCAATCTATTTGCATGTTCACGACTAGTGGGCTTTCCGGGTATCAATATTGGAAGTCTAAAAGCTCTTAAATACTTGGATTTGTCATGGTGTGAGAACCTTGAGAGTCTTCCGAATAGTATTGGTAGTTTGAGCTCTCTTCAAACTCTTTTATTGATAGGGTGTTCAAAACTGAAGGGCTTTCCAGATATCAATTTTGGAAGTCTAAAAGCTCTTGAATCGTTAGATTTCTCAGGTTGCAGAAACCTTGAGAGTCTTCCCGTGAGCATTTACAATGTAAGCTCTCTCAAAACTTTGGGGATTACAAATTGTCCAAAACTCGAGGAAATGTTAGAGATGAAACTAGGGGTTGATCCATGCCCCTGGCCATTTTCACCTCTAACCTGTCACATTTCAAATTCAGCAATAATCTGGGATGATCACTGGCATGACTGCTTTTCCTCATTAGAAGCATTAGACTCACAGTGCCCCCTGTCATCACTGGTAGAATTATCTGTAAGAAAGTTTTATGACATGGAAGAAGACATCCCCATTGGCAGTTCCCACCTAACCTCATTGGAAATATTATCTCTGGGGAACGTCCCTACAGTAGTAGAAGGAATCCTCTATGACATTTTCCATCTATCTTCATTGGTAAAATTATCTCTTACTAAATGCAAGCCAACAGAAGAAGGAATCCCCCGTGATATTCAGAACCTATCTCCACTGCAACAATTATCTCTACATGACTGCAATCTAATGAAAGGAACGATCCTCGATCATATTTGCCATCTAACATCCTTGGAAGAATTATATCTGGGTTGGAACCATTTTAGTAGCATTCCTGCTGGCATCAGTCGACTTTCCAATCTAAAAGCCCTTGACTTGAGTCACTGCAAGAAGCTTCAACAAATTCCAGAGCTTCCATCTAGTCTACGATTTTTAGATGCGCACTGTCCGGATCGTATTTCATCAAGCCCCTTGCTTCTACCTATTCATTCTATGGTCAATTGCTTCAAATCAAAAATTGAGGGGCGCAAGGTTATTAATAGGTATTCTTCCTTCTATGGCAATGGGATTGGTATTGTTATTCCTAGTAGTGGAATTCTAGAGTGGATAACGTATCGGAATATGGGAAGGCAAGTAACAATAGAGCTCCCTCCGAATTGGTATAAAAATGATGACTTGTGGGGATTTGCTTTATGCTGTGTTTATGTTGCACCTGCCTGTAAATCTGAGGATGAATCTCAGTATGAATCAGGTCTTATATCTGAGGATGACAGTGACCTTAAAGATGAAGAAGCAAGCTTTTATTGTGAATTGACAATCGAAGGAAATAATCAATCAGAAGACGTGGGTCATTTCTTTCTTCATTCTCGCTGTATTAAGGATGATGTATCAGATATGCAGTGGGTGATATGTTATCCCAAGTTAGCTATTGAGAAAAGTTATCACACCAATCAATGGACACACTTCAAGGCTTCATTTGGTGGTGCCCAAGTGGAAGAGTGCGGAATCCGTCTTGTATACAGAAAAGATTATGAACAGAAGCATCCAAGAATGGCACAAGGCAGTACTTCTCATGGGAATTTTGGTGAGCATGGATCAGTAAGAGAAGATACTGATAGTAAAGCTCACAATAAAAGGAATCCCACAGAACAGAGCCCAGGAGAGGAGTCACACCATAAAAGATCCAGAGAAACCCAAGACTGA 3657 0.3886 MECQKEKGQIVYPVFYHVRPCEVRNQYGTYGEEFKKHESNADEEKKKKIGEWRTALRKAGDLSGFSLRDRSEAEFIEEIIGEIRRLIPKWVHVGENIVGMDENLKKVKLLIDAQSNKVSMVGIYGTGGIGKTTIAKVVYNDMLDQFKCHSFLENVREKYEDKGDLLQLQKELLCDILMEKNLVLRNIDEGFKKIKSKRHSEKVLIVLDDVGCEEQLKFLAPNSECFHPGSIIIVTTRNKRCLDVYDSYSSYEAKRMADKQAEELFCWNAFKQDHPIENFVGLSNRILDYADGLPLALVVLGSFLFQRPMDEWESTLDELKTIPPENIQKVLQISYDGLSDERKKLFLYIACFFKDEDEKMATRILESCKLHPAIGLRVLHERCLISIEDNTIRMHDLLQEMGWAIVCNDPERPGKWSRLCELQDIESVLSQNEWTKNIEGIFTSQSRHTGKHIQLTTEVFRNMNQLRLLKVEFNQIVQLSQDFELPCHDLVYFHWDYYPLEYLPSNFHTDNLVELNLWCSRIKHLWEGNMPAKKLKVIDLSYSMHLVDISSISSMPNLETLTLKGCTRLKSLPRNFPKLECLQTLSCCGCSNLESFPKIEEEMRSLRKLNLSQTGIMGLPSSISKLNGLKELDLSSCKKLSSLPDSIYSLSSLQTLNLFACSRLVGFPGINIGSLKALKYLDLSWCENLESLPNSIGSLSSLQTLLLIGCSKLKGFPDINFGSLKALESLDFSGCRNLESLPVSIYNVSSLKTLGITNCPKLEEMLEMKLGVDPCPWPFSPLTCHISNSAIIWDDHWHDCFSSLEALDSQCPLSSLVELSVRKFYDMEEDIPIGSSHLTSLEILSLGNVPTVVEGILYDIFHLSSLVKLSLTKCKPTEEGIPRDIQNLSPLQQLSLHDCNLMKGTILDHICHLTSLEELYLGWNHFSSIPAGISRLSNLKALDLSHCKKLQQIPELPSSLRFLDAHCPDRISSSPLLLPIHSMVNCFKSKIEGRKVINRYSSFYGNGIGIVIPSSGILEWITYRNMGRQVTIELPPNWYKNDDLWGFALCCVYVAPACKSEDESQYESGLISEDDSDLKDEEASFYCELTIEGNNQSEDVGHFFLHSRCIKDDVSDMQWVICYPKLAIEKSYHTNQWTHFKASFGGAQVEECGIRLVYRKDYEQKHPRMAQGSTSHGNFGEHGSVREDTDSKAHNKRNPTEQSPGEESHHKRSRETQD* 1219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1922 1218 MobiDBLite consensus disorder prediction 1181 1218 - -
Vvi18g1922 1218 SUPERFAMILY Toll/Interleukin receptor TIR domain 1 65 IPR035897 -
Vvi18g1922 1218 SMART LRR_CC_2 626 653 IPR006553 -
Vvi18g1922 1218 SMART LRR_CC_2 724 751 IPR006553 -
Vvi18g1922 1218 SMART LRR_CC_2 675 702 IPR006553 -
Vvi18g1922 1218 Gene3D - 1 87 IPR035897 -
Vvi18g1922 1218 Pfam NB-ARC domain 110 335 IPR002182 GO:0043531
Vvi18g1922 1218 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 3 647 IPR044974 GO:0006952
Vvi18g1922 1218 Gene3D - 256 340 IPR042197 -
Vvi18g1922 1218 PRINTS Disease resistance protein signature 934 950 - -
Vvi18g1922 1218 PRINTS Disease resistance protein signature 120 135 - -
Vvi18g1922 1218 PRINTS Disease resistance protein signature 290 304 - -
Vvi18g1922 1218 PRINTS Disease resistance protein signature 197 211 - -
Vvi18g1922 1218 MobiDBLite consensus disorder prediction 1166 1218 - -
Vvi18g1922 1218 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 89 349 IPR027417 -
Vvi18g1922 1218 Pfam TIR domain 1 90 IPR000157 GO:0007165
Vvi18g1922 1218 ProSiteProfiles TIR domain profile. 1 87 IPR000157 GO:0007165
Vvi18g1922 1218 SUPERFAMILY L domain-like 393 764 - -
Vvi18g1922 1218 Gene3D - 88 250 IPR027417 -
Vvi18g1922 1218 Gene3D Ribonuclease Inhibitor 602 771 IPR032675 -
Vvi18g1922 1218 Gene3D Ribonuclease Inhibitor 436 601 IPR032675 -
Vvi18g1922 1218 Gene3D Ribonuclease Inhibitor 785 1013 IPR032675 -
Vvi18g1922 1218 Pfam C-JID domain 1013 1162 IPR045344 -
Vvi18g1922 1218 SUPERFAMILY RNI-like 832 977 - -
Vvi18g1922 1218 SMART LRR_typ_2 626 650 IPR003591 -
Vvi18g1922 1218 SMART LRR_typ_2 724 748 IPR003591 -
Vvi18g1922 1218 SMART LRR_typ_2 913 936 IPR003591 -
Vvi18g1922 1218 SMART LRR_typ_2 675 699 IPR003591 -
Vvi18g1922 1218 SMART LRR_typ_2 603 625 IPR003591 -
Vvi18g1922 1218 SMART LRR_typ_2 555 579 IPR003591 -
Vvi18g1922 1218 SMART LRR_typ_2 463 485 IPR003591 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g1922 Vvi-Chr18 26481482 26486861 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g1922 98 741 WRKY Transcription Factor Family AT5G45050 32.849 2.00e-86 305
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1922 - - vvi:100241448 1661.74