Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1912 ATGGAGTTAGAGCAGAAGGGAGACTTAGCTACTAGAGACCTACTGTCTCACATGCTCTTAGCATCAGATGAAAATTGTGATGTTAAGAGTGAGATGGAGATCAGTACTCAAGTTATTTGTCTGCTTTTTGCTACCCATCACACCACAAGTTCTGTCATCACATTCATCCTCAAGTACCTGGCCGAGTTCCCTGATGTCTATAGCAAAGTCTTAAAAGAGCAAATGGAGATTGCAAAGAGCAAAGGTCCGGAAGGGTTTCTGAAGTGGGATGACATTCAAAAGATGAAATATACTTGGAATGTAGCAAATGAAACAATGAGGCTAACCCCACCTGTGCAAGGAACTTTTAGAGAAGCCATAACTGACATCACGTATGCAGGTTTTACAATTCCAAGGGGATGGAAGATGCATTGGAATGTAAATACAACACATAGAGATCCCAAGTATTTTCCTGATCCCGAGAAATTCAATCCCTCGAGGTTTGAAGGAAAAGGGCCTCAACCATTCACTTTTGTGCCTTTTGGGGGAGGGCCTCGGATGTGCCCCGGAAGGGAATATGCTCGAGCGCAGGTACTTGCATTCATACATCATGTGGTGACAAGATTCAAATGGGAGAAAGTAGATCCCTGTGAAAAGGTTGCATATAATCCATCACCCATTCCTTCCAAGGGCTTCCCAATTCGCCTCCAGCCTCTACAAAATGGATCTATTTAA 714 0.4342 MELEQKGDLATRDLLSHMLLASDENCDVKSEMEISTQVICLLFATHHTTSSVITFILKYLAEFPDVYSKVLKEQMEIAKSKGPEGFLKWDDIQKMKYTWNVANETMRLTPPVQGTFREAITDITYAGFTIPRGWKMHWNVNTTHRDPKYFPDPEKFNPSRFEGKGPQPFTFVPFGGGPRMCPGREYARAQVLAFIHHVVTRFKWEKVDPCEKVAYNPSPIPSKGFPIRLQPLQNGSI* 238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1912 237 PRINTS E-class P450 group I signature 53 79 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi18g1912 237 PRINTS E-class P450 group I signature 139 163 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi18g1912 237 PRINTS E-class P450 group I signature 171 181 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi18g1912 237 PRINTS E-class P450 group I signature 181 204 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi18g1912 237 PRINTS E-class P450 group I signature 33 50 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi18g1912 237 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 174 183 IPR017972 GO:0005506|GO:0016705
Vvi18g1912 237 Gene3D Cytochrome P450 1 232 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi18g1912 237 FunFam Uncharacterized protein 75 232 - -
Vvi18g1912 237 PANTHER CYTOCHROME P450 26 12 220 - -
Vvi18g1912 237 Pfam Cytochrome P450 10 206 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi18g1912 237 SUPERFAMILY Cytochrome P450 6 231 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi18g1912 237 PRINTS P450 superfamily signature 44 61 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi18g1912 237 PRINTS P450 superfamily signature 181 192 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi18g1912 237 PRINTS P450 superfamily signature 172 181 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi18g1912 237 PRINTS P450 superfamily signature 100 111 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g1912 Vvi-Chr18 26340417 26341510 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g1912 2 226 Cytochrome P450 AT3G19270 40.265 8.60e-52 172
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1912 K20667 - vvi:100251618 500.36