Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1909 ATGGGTTGGGCAATTATTCGTGAAGAATGTCTTGGAGACCCCTGCAAATGGAGTAGATTGTGGGATGTAGATGATATTTATGATGCATTTTCTAAACAAGAGGAGATGCAAAATATTCAAACCATATCTTTGGACTTGTCTAGATCAAGAGAAATACAATTCAATACAAAAGTGTTTTCCAAGATGAAGAAACTTAGGTTGCTTAAAATCTATTGCAATGATCATGATGGTTTGACGAGAGAGGAGTATAAAGTGCTTCTTCCTAAAGACTTTCAATTTCCTCATGATTTGAGATATCTTCATTGGCAAAGATGCACTTTGACGTCTTTACCTTGGAACTTTAATGGAAAGCACCTGATTGAAATCAACTTGAAGTCTAGCAACGTAAAACAACTTTGGAAAGGGAATAGGCGTCTTGAAGAATTAAAGGGCATTGATCTAAGTAACTCAAAACAATTGGTCAAAATGCCAAAATTCTCAAGCATGTCGAATTTGGAGAGACTGAATCTTGAAGGTTGTATAAGCTTGCGTGAACTTCATCCATCTATTGGCGATCTCAAAAGTTTGACTTACTTGAATTTAGGAGGATGTGAACAGCTCCGAAGTTTCCTATCCAGCATGAAGTTTGAATCTCTTGAAGTTCTTTATCTTAATTGTTGTCCAAACTTGAAGAAGTTTCCTGAGATCCATGGGAATATGGAATGTTTGAAGGAGCTTTATTTAAACAAGAGTGGGATCCAAGCACTACCAAGTAGCATTGTGTATTTAGCATCTCTTGAAGTCCTTAATCTCTCATATTGTTCAAATTTCAAGAAATTTCCTGAGATCCATGGGAATATGGAATGTTTGAAGGAGCTTTATTTCAACAGGAGTGGGATCCAAGAACTACCAAGTAGCATTGTGTATTTAGCATCTCTTGAAGTCCTTAATCTCTCAGATTGTTCAAATTTCGAGAAATTTCCTGAGATCCATGGGAATATGAAATTTTTGAGGGAGCTTTATTTAGAAAGATGTTCAAAGTTTGAGAAATTTCCGGATACATTTACCTATATGGGACATTTAAGGGGGCTTCATTTACGTGAGAGTGGTATTAAAGAACTCCCAAGCAGCATTGGGTATTTGGAATCTCTTGAAATTCTTGACCTCTCATGTTGCTCCAAATTTGAGAAATTCCCAGAGATCCAAGGGAATATGAAATGTTTGTTGAATCTTTTTTTAGATGAGACTGCTATTAAGGAACTCCCAAATAGCATTGGGTCCTTAACCTCTCTTGAAATGCTTTCTCTTAGAGAATGTTCAAAGTTTGAGAAATTTTCAGATGTATTTACCAATATGGGGCGTTTAAGGGAGCTATGTCTATATGGGAGTGGTATTAAGGAACTCCCAGGCAGCATTGGGTATTTGGAATCTCTTGAAGAACTTAACCTCAGATATTGCTCAAACTTTGAGAAATTTCCAGAGATCCAAGGGAATATGAAATGCTTGAAGATGCTTTGTTTAGAGGATACTGCTATTAAGGAACTCCCAAATGGCATTGGGCGCTTGCAGGCCCTTGAAATTCTTGATCTCAGTGGTTGCTCAAATCTTGAGAGGTTTCCTGAGATTCAAAAAAATATGGGGAATCTATGGGGTCTTTTTCTAGATGAGACTGCTATTAGAGGATTACCCTACTCAGTAGGTCATCTCACCAGACTTGAACGCTTAGATTTGGAAAATTGTAGAAACTTGAAAAGTCTTCCAAACAGTATATGTGGGTTGAAATCCCTCAAAGGCCTCTCTCTCAATGGTTGTTCAAATCTAGAGGCTTTTTTAGAGATCACGGAGGATATGGAACAATTAGAAGGCCTTTTTTTATGTGAGACGGGTATCTCAGAGCTGCCATCATCAATTGAACATCTGAGAGGTCTTAAATCCTTGGAATTGATCAATTGTGAGAACCTTGTGGCTCTTCCCAATAGCATCGGTAATTTGACATGTCTTACTAGTCTTCATGTTCGTAACTGTCCAAAGCTCCACAACTTGCCTGACAATTTGAGAAGCCAGCAATGTATCTTAACGTCGCTAGATCTAGGTGGTTGCAATCTGATGGAAGAAGAAATCCCCAGTGATTTATGGTGCCTATCCTCACTGGAATTTTTAAACATAAGTGAAAACCATATGCGTTGCATACCTACTGGCATCACTCATCTTTGTAAGCTTCGTACCCTTCTCATGAATCATTGTCCGATGCTTGAAGTAATTGGAGAGCTTCCATCAAGTCTAGGATGGATAGAGGCACATGGTTGTCCATGCCTGGAAACTGAAACTTCTTCAAGTCTACTCTGGTCTTCTTTGCTCAAACACTTGAAATCACCAATTCAGCGGAGATTTAATATTATCATTCCAGGAAGTAGTGGAATACCAGAGTGGGTAAGTCATCAAAGAATGGGATGTGAAGTAAGTGTGGAGCTTCCAATGAATTGGTATGAAGATAATAACTTGTTAGGATTTGTTTTATTCTTCCATCATGTTCCCCTTGATGATGATGAATGCGTGAGAACATCTTATTTTCCTCAATGTGAATTGGCGATATCCCATGGTGATCAATCTAAACGACTGGATAATATTCATTTTCATCCTCATTGTAAAAGATACTGCATTGAAGGTATATCATGTAGCAGCGAACGCTACGACAGTGGTAGCACATCAGATCCAGCACTGTGGGTGACGTATTTCCCGCAGATTGGCATTCCAAGCAAGTATCGATCCAGAAAGTGGAACAACTTCAAGGCTCACTTTTACAATCGTGTCTATAATGCCTCTTTTACATGTGGCGAAAACGCATCCTTTAAAATGAAAAGTTGTGGGATACATCTCATATATGCCCAAGATCAGAAGCATTGGCCTCAGCCGTCGGGAAAAAGGCCTGCTAATAGAGAAGATCACTCATCCAAGGAAAAATTCTCTAGTTTCCAAAGGATCAAGGGTTTCTTTAACCTCTAG 2982 0.3863 MGWAIIREECLGDPCKWSRLWDVDDIYDAFSKQEEMQNIQTISLDLSRSREIQFNTKVFSKMKKLRLLKIYCNDHDGLTREEYKVLLPKDFQFPHDLRYLHWQRCTLTSLPWNFNGKHLIEINLKSSNVKQLWKGNRRLEELKGIDLSNSKQLVKMPKFSSMSNLERLNLEGCISLRELHPSIGDLKSLTYLNLGGCEQLRSFLSSMKFESLEVLYLNCCPNLKKFPEIHGNMECLKELYLNKSGIQALPSSIVYLASLEVLNLSYCSNFKKFPEIHGNMECLKELYFNRSGIQELPSSIVYLASLEVLNLSDCSNFEKFPEIHGNMKFLRELYLERCSKFEKFPDTFTYMGHLRGLHLRESGIKELPSSIGYLESLEILDLSCCSKFEKFPEIQGNMKCLLNLFLDETAIKELPNSIGSLTSLEMLSLRECSKFEKFSDVFTNMGRLRELCLYGSGIKELPGSIGYLESLEELNLRYCSNFEKFPEIQGNMKCLKMLCLEDTAIKELPNGIGRLQALEILDLSGCSNLERFPEIQKNMGNLWGLFLDETAIRGLPYSVGHLTRLERLDLENCRNLKSLPNSICGLKSLKGLSLNGCSNLEAFLEITEDMEQLEGLFLCETGISELPSSIEHLRGLKSLELINCENLVALPNSIGNLTCLTSLHVRNCPKLHNLPDNLRSQQCILTSLDLGGCNLMEEEIPSDLWCLSSLEFLNISENHMRCIPTGITHLCKLRTLLMNHCPMLEVIGELPSSLGWIEAHGCPCLETETSSSLLWSSLLKHLKSPIQRRFNIIIPGSSGIPEWVSHQRMGCEVSVELPMNWYEDNNLLGFVLFFHHVPLDDDECVRTSYFPQCELAISHGDQSKRLDNIHFHPHCKRYCIEGISCSSERYDSGSTSDPALWVTYFPQIGIPSKYRSRKWNNFKAHFYNRVYNASFTCGENASFKMKSCGIHLIYAQDQKHWPQPSGKRPANREDHSSKEKFSSFQRIKGFFNL* 994
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1909 993 MobiDBLite consensus disorder prediction 966 981 - -
Vvi18g1909 993 SUPERFAMILY L domain-like 209 532 - -
Vvi18g1909 993 SUPERFAMILY RNI-like 37 269 - -
Vvi18g1909 993 Gene3D Ribonuclease Inhibitor 610 784 IPR032675 -
Vvi18g1909 993 MobiDBLite consensus disorder prediction 959 981 - -
Vvi18g1909 993 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 57 421 534 - -
Vvi18g1909 993 Gene3D Ribonuclease Inhibitor 28 208 IPR032675 -
Vvi18g1909 993 SMART LRR_typ_2 398 421 IPR003591 -
Vvi18g1909 993 SMART LRR_typ_2 233 256 IPR003591 -
Vvi18g1909 993 SMART LRR_typ_2 562 586 IPR003591 -
Vvi18g1909 993 SMART LRR_typ_2 492 515 IPR003591 -
Vvi18g1909 993 SMART LRR_typ_2 707 730 IPR003591 -
Vvi18g1909 993 SMART LRR_typ_2 351 374 IPR003591 -
Vvi18g1909 993 SMART LRR_typ_2 445 468 IPR003591 -
Vvi18g1909 993 SMART LRR_typ_2 280 303 IPR003591 -
Vvi18g1909 993 SMART LRR_typ_2 610 633 IPR003591 -
Vvi18g1909 993 SMART LRR_typ_2 162 186 IPR003591 -
Vvi18g1909 993 Gene3D Ribonuclease Inhibitor 209 401 IPR032675 -
Vvi18g1909 993 Gene3D Ribonuclease Inhibitor 402 609 IPR032675 -
Vvi18g1909 993 Pfam C-JID domain 798 958 IPR045344 -
Vvi18g1909 993 Pfam Leucine Rich Repeat 564 586 IPR001611 GO:0005515
Vvi18g1909 993 SUPERFAMILY L domain-like 447 791 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g1909 Vvi-Chr18 26259055 26262353 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g1909 397 713 WRKY Transcription Factor Family AT4G12020 30.723 2.59e-15 79.3