Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1905 ATGGGACATTATGCTCAAGGTCTCCCTTTGGCCCTTAAAGTTCTAGACGGTGTTGCTATTAAAGGATTACCTTGCTCAATAAGTCATCTCACCCAACTTGATTACTTATGTTTGAAAAACTGTAGAAACTTGAGGAGTCTTCCAAACACAATAGGTCATCTCACCAGGCTTAGTACCTTAAATTTGGAAGAGTGCAGAAACTTGAGGAGTCTTCCAAACACAATTTGTGGGTTGAAATCCCTCAAAACCCTTGGTCTCGATAGTTGTTCAAGTGTAGAGGCTTTTCCGGAGATTATGGAGGATATGGAACATTTGGAAGAACTTAATTTATGTGGAACAGATATATCAGAGCTTCCATCTTCAATTGAACATTTAAGAGGACTTTGGCATTTGCAATTGAACAAATGTGAGAAGCTTGTGAGTCTTCCCAACAGCATTGGTAATTTGACATGTCTTGTTCGTCTTTGTGTTTCTAACTGTTCCAAGCTCCGCAATTTTCCCAACAATTTGAGAAGCCTGCATTGTTGCTTAAGAGATCTAGATCTAGGTGGCTGCAATCTGATGGAAGGAGAAATCCCCAGTGATTTATGGTGCCTATCCTCACTGAAATTTTTAAACCTAAGCGGAAACCATATTCGTTGCGTACCTGTTGGCATCATTCAACTTTCTCGGCTCTTTACCCTTTTCGTGAATCACTGTCCGATGCTTGAAGAAATTGGAGAGCTTCCATCAAGTCTAGGATGGATACGTGCACATGGTTGTCCATGCCTGGAAACTGAAACTTTCTCAAGTCTACTTTGGTCTTCTCTGCTCAAATGCTTCAAATCACCAATTCAGTTAGCAGTTTCATGGATTGGAGATTTGTCGTTCCAGGAAGGAATGGAATACCAGAGTGGGTACGCCATCAAAGAATGGGATGTGAAGTAG 927 0.411 MGHYAQGLPLALKVLDGVAIKGLPCSISHLTQLDYLCLKNCRNLRSLPNTIGHLTRLSTLNLEECRNLRSLPNTICGLKSLKTLGLDSCSSVEAFPEIMEDMEHLEELNLCGTDISELPSSIEHLRGLWHLQLNKCEKLVSLPNSIGNLTCLVRLCVSNCSKLRNFPNNLRSLHCCLRDLDLGGCNLMEGEIPSDLWCLSSLKFLNLSGNHIRCVPVGIIQLSRLFTLFVNHCPMLEEIGELPSSLGWIRAHGCPCLETETFSSLLWSSLLKCFKSPIQLAVSWIGDLSFQEGMEYQSGYAIKEWDVK* 309
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1905 308 Gene3D Ribonuclease Inhibitor 101 281 IPR032675 -
Vvi18g1905 308 ProSiteProfiles Leucine-rich repeat profile. 201 223 IPR001611 GO:0005515
Vvi18g1905 308 SMART LRR_typ_2 102 125 IPR003591 -
Vvi18g1905 308 SMART LRR_typ_2 54 78 IPR003591 -
Vvi18g1905 308 SMART LRR_typ_2 199 222 IPR003591 -
Vvi18g1905 308 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 57 14 108 - -
Vvi18g1905 308 Gene3D Ribonuclease Inhibitor 12 100 IPR032675 -
Vvi18g1905 308 SUPERFAMILY L domain-like 16 271 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g1905 Vvi-Chr18 26187569 26190602 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g1905 27 205 WRKY Transcription Factor Family AT4G12020 37.989 2.06e-17 81.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1905 - - vvi:100251701 568.54