Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1899 ATGGGACTTTTAACAGAGCTTCGTTTAGATGAGAGTCGTATTAAAGAACTCCCAAGTAGCATTGGGTATTTGGAATCTCTTAAAATCCTTAACCTCTCATATTGCTCGAACTTTGAAAAATTCCTAGAGATTCAAGGGAGTATGAAACATTTGAGAGAGCTTTCTTTAAAGGAGACTGCTATTAAGGAACTCCCAAACAACATTGGGCGGTTAGAGGCCCTTGAAATTCTTTCTTTCAGTGGTTGCTCAAATTTTGAGAAGTTTCCTGAGATCCAAAAAAATATGGAGAGTATATGTTCTCTTTCTCTGGACTACACTGCTATTAAAGGATTACCCTGCTCAATAAGTCATCTCACCCGACTTGATCACTTAGAAATGGAAAACTGTAAAAACTTAAGGTGTCTTCCAAACAATATTTGTGGGTTGAAATCCCTTAGAGGCATCTCTCTCAATGGGTGTTCAAAACTAGAGGCTTTTTTGGAGATCAGGGAGGATATGGAGCAATTAGAACGTCTTTTTTTACTTGAAACGGCTATAACGGAGCTGCCACCATCGATTGAACATTTAAGAGGTCTTAAATCTTTGGAATTGATCAATTGTGAGAAGCTTGTGAGTCTTCCCGACAGCATTGGTAATTTGACATGTCTTAGAAGTCTTTTTGTTCGAAACTGTTCAAAACTCCACAACTTGCCTGACAATTTGAGAAGCTTGAAATGTTGCTTAAGGGTGCTAGATCTAGGTGGTTGCAATCTGATGGAAGGAGAAATCCCCCATGATTTATGGTGCCTATCCTCGTTGGAATATTTAGATATAAGCGACAACTATATTCGTTGCATACCTGTCGGCATCTCTCAACTTTCTAAGCTTCGAACCCTTCTCATGAATCACTGTCCAATGCTCGAAGAAATTACAGAGCTTCCATCAAGTCGAACATGGATGGAGGCACATGGTTGTCCATGCTTGGAAACTGAAACTTCCTCAAGTCTACTATGGTCTTCTCTGCTCAAACGCTTCAAATCACCAATTCAGTGGAAATTTAATATTGTTATTCCAGGAAGTAGTGGAATACCAGAGTGGGTAAGTCATCAGAGAATGGGATGTGAAGTAAAAATAAAGCTCCCTATGAATTGGTACGAAGATAACAACTTGTTAGGATTTGTTTTATTCTTCCATCATGTTCCTCATGATGATGATGAATGTGAGACAACAATGTATTCCACAATGTTTATTCCACAATGTATATTGACGATATCCCATGGAGATCAATATGAACAACTGGATAATATATGCTTTTATCACCGTTGTAAAAGATATTGGGTTAGTGGCTTATCATATGACAGTATGTACTACGACAATGGTGACACATCAGATCCAGCATTATGGGTGACGTATTTTCCTCAGATTGCCATTCCAAGTAAGTATCGATCCAGGAAGTGGAACTACTTTAAGGCTCATTTTGAGACTCCAATGGATCGTGGCTCTTTTAGATGTGGTGATAACGCATCCTTTAAAGTGAAGAGTTGTGGGATACATCTCATATACGCCCAAGATCATCATCAACACAATCACAACCATTGGCCTCAGTCCATGGATAATTTGAATTATGAATAA 1611 0.3867 MGLLTELRLDESRIKELPSSIGYLESLKILNLSYCSNFEKFLEIQGSMKHLRELSLKETAIKELPNNIGRLEALEILSFSGCSNFEKFPEIQKNMESICSLSLDYTAIKGLPCSISHLTRLDHLEMENCKNLRCLPNNICGLKSLRGISLNGCSKLEAFLEIREDMEQLERLFLLETAITELPPSIEHLRGLKSLELINCEKLVSLPDSIGNLTCLRSLFVRNCSKLHNLPDNLRSLKCCLRVLDLGGCNLMEGEIPHDLWCLSSLEYLDISDNYIRCIPVGISQLSKLRTLLMNHCPMLEEITELPSSRTWMEAHGCPCLETETSSSLLWSSLLKRFKSPIQWKFNIVIPGSSGIPEWVSHQRMGCEVKIKLPMNWYEDNNLLGFVLFFHHVPHDDDECETTMYSTMFIPQCILTISHGDQYEQLDNICFYHRCKRYWVSGLSYDSMYYDNGDTSDPALWVTYFPQIAIPSKYRSRKWNYFKAHFETPMDRGSFRCGDNASFKVKSCGIHLIYAQDHHQHNHNHWPQSMDNLNYE* 537
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1899 536 SUPERFAMILY L domain-like 4 337 - -
Vvi18g1899 536 Gene3D Ribonuclease Inhibitor 1 161 IPR032675 -
Vvi18g1899 536 Gene3D Ribonuclease Inhibitor 162 340 IPR032675 -
Vvi18g1899 536 Pfam C-JID domain 354 517 IPR045344 -
Vvi18g1899 536 ProSiteProfiles Leucine-rich repeat profile. 265 286 IPR001611 GO:0005515
Vvi18g1899 536 SMART LRR_typ_2 48 71 IPR003591 -
Vvi18g1899 536 SMART LRR_typ_2 166 189 IPR003591 -
Vvi18g1899 536 SMART LRR_typ_2 118 142 IPR003591 -
Vvi18g1899 536 SMART LRR_typ_2 1 24 IPR003591 -
Vvi18g1899 536 SMART LRR_typ_2 263 286 IPR003591 -
Vvi18g1899 536 PANTHER LEUCINE-RICH REPEAT-CONTAINING 169 323 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g1899 Vvi-Chr18 26112969 26116153 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g1899 3 79 WRKY Transcription Factor Family AT4G12020 48.718 8.02e-09 56.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1899 - - vvi:100248194 791.186