Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1897 ATGGCCAAACACCCGCTTTCCTTCCTCCATTTCTTGCTTTGCTGCTGCTTTTTCTCTACCCTTTTATCACCTTCCCTATCCTCAGTCGAAGTTGAAGCCCTCCTTCAGTTCAAGAAACAGCTGAAAGACCCCTTACATCGTTTGGACTCCTGGAAAGATTCAGATTCTCCTTGTAAATTTTTCGGGGTCTCATGTGATCCAATCACTGGACTAGTAAACGAACTCTCACTCGACAATAAGTCTCTGTCGGGTGAGATCTCTTCGTCGCTATCTGCACTCCGAAGCCTCACACATCTTGTACTTCCTTCAAATTCGCTTTCTGGATATCTACCTTCGGAATTAAACAAATGCAGCAATCTTCAGGTGTTGAATGTGACTTGCAATAATTTAATCGGAACAGTTCCCGATCTTTCAGAGTTGAGCAACTTACGGACTCTGGATTTGTCGATAAACTACTTTTCTGGTCCATTCCCGTCTTGGGTGACAAATTTGACTGGTTTGGTTTCTCTGTCCCTTGGGGAAAACCATTATGATGAGGGTGAAATTCCTGAGAGTATTGGAAATTTGAAGAATTTGAGTTATATCTTTTTTGCACATTCCCAGTTGAGGGGTGAGATTCCAGAATCGTTTTTTGAAATTACAGCAATGGAATCGTTGGATTTTTCTGGCAACAACATCTCAGGGAACTTCCCCAAGTCCATTGCCAAGTTACAGAAACTTTACAAGATTGAGCTCTTTGATAACCAGCTCACTGGAGAGATCCCACCAGAGCTTGCAAACCTCACCCTTTTGCAGGAAATTGATATTTCTGAGAACCAGTTGTATGGAAAATTGCCTGAAGAGATTGGTCGGCTGAAGAAGTTGGTGGTTTTTGAATCATATGACAACAACTTCTCCGGAGAAATCCCTGCAGCGTTTGGGGACTTGAGTAATCTCACAGGGTTTTCCATCTATAGGAACAATTTTTCAGGAGAATTTCCAGCAAATTTTGGCCGATTCTCTCCGCTGAACAGTTTTGACATATCTGAGAATCAGTTTTCGGGTGCTTTCCCAAAGTACTTGTGTGAAAATGGGAGATTGCTGTACTTGCTTGCTCTGGGAAACCGATTTTCTGGGGAGTTCCCAGATTCTTATGCCAAGTGTAAATCTCTCCAGAGGTTGAGGATAAATGAGAATCAGCTCTCCGGGGAAATCCCAAATGGGATATGGGCACTGCCTAATGTACAAATGATTGATTTTGGTGATAATGGGTTCAGTGGAAGAATATCTCCAGACATTGGGACTGCCAGCAGCTTGAATCAGTTAATTTTGGCGAATAATAGGTTTTCGGGTAAGCTTCCATCTGAACTTGGCAGCCTTGCAAACTTAGGGAAGCTCTATTTGAATGGCAATGAGTTCTCTGGAAAAATTCCTTCTGAATTAGGTGCTTTAAAGCAGTTATCGTCTTTGCATCTTGAAGAAAATTCGCTCACAGGATCAATCCCGGCAGAACTGGGCAAATGTGCTAGGCTGGTGGACTTGAATCTTGCTTGGAATTCTCTCAGCGGTAATATCCCTGACTCATTTTCACTGCTGACCTACTTGAACTCTCTGAATCTCTCTGGGAATAAGCTTACAGGTTCACTTCCAGTCAATTTGCGAAAATTGAAGCTAAGTTCTATAGATTTGTCTAGGAACCAGCTATCTGGAATGGTTTCATCGGATCTTTTGCAAATGGGTGGAGACCAAGCGTTTCTTGGGAACAAGGGGCTCTGTGTTGAGCAAAGTTACAAAATCCAATTGCATTCGGGATTGGACGTTTGCACTGGAAACAATGATCCAAAAAGGGTTGCTAAAGAAAAGCTGTTTTTGTTTTGCATCATCGCCTCGGCCTTGGTTATTCTTTTAGTTGGATTACTGGTTGTGAGTTACCGGAACTTCAAGCACAATGAGTCTTACGCAGAAAATGAATTGGAAGGTGGGAAGGAGAAAGATCTAAAATGGAAACTCGAGTCTTTCCACCCAGTGAACTTCACTGCAGAGGACGTATGTAACCTGGAAGAGGACAATCTGATTGGAAGTGGAGGCACAGGCAAAGTTTACCGTTTAGATTTGAAGAGAAATGGTGGCCCTGTGGCCGTGAAGCAACTATGGAAGGGAAGTGGAGTGAAGGTTTTCACAGCAGAAATTGAGATTTTGAGGAAGATCAGGCACAGGAATATCATGAAGCTTTATGCCTGCCTCAAGAAAGGAGGGTCGAGTTTTCTGGTGTTGGAGTACATGTCCAATGGTAACCTCTTTCAGGCCCTTCACAGGCAGATTAAGGAAGGGGTGCCAGAACTGGATTGGCACCAACGATACAAAATCGCACTGGGAGCAGCAAAAGGCATTGCTTATCTACACCATGATTGTTCACCGCCTATCATTCATCGAGATATTAAATCAACCAACATTTTACTTGATGAGGAGTACGAGCCCAAAATCGCAGACTTTGGGGTTGCGAAGATTGCTGACAATTCTTCTACTGAATCTTATTCTAGCTGTTTTGCAGGGACTCATGGATACATTGCACCTGAGCTGGCATATACTCTGAAAGTCACTGAAAAGAGTGATATATATAGTTTTGGCGTGGTTCTGTTAGAATTAGTTACTGGTCGAAGACCGATTGAAGAGGAGTATGGAGAAGGAAAGGATATTGTTTATTGGGTTGGGACTCATCTCAGTGACCAGGAAAATGTGCAAAAACTTCTTGACCGTGACATCGTATCTGATCTCGTCCAAGAGGACATGCTTAAGGTCTTGAAGGTCGCTATCCTTTGCACCAACAAGCTTCCAACTCCACGCCCTACTATGAGAGACGTTGTGAAGATGATCATTGACGCTGATTCTTGCACGCTCAAGTCTCCCGAAAGCAATCCAGAAAAAAATGTAAAGCCTCTTCTCTAG 2925 0.4315 MAKHPLSFLHFLLCCCFFSTLLSPSLSSVEVEALLQFKKQLKDPLHRLDSWKDSDSPCKFFGVSCDPITGLVNELSLDNKSLSGEISSSLSALRSLTHLVLPSNSLSGYLPSELNKCSNLQVLNVTCNNLIGTVPDLSELSNLRTLDLSINYFSGPFPSWVTNLTGLVSLSLGENHYDEGEIPESIGNLKNLSYIFFAHSQLRGEIPESFFEITAMESLDFSGNNISGNFPKSIAKLQKLYKIELFDNQLTGEIPPELANLTLLQEIDISENQLYGKLPEEIGRLKKLVVFESYDNNFSGEIPAAFGDLSNLTGFSIYRNNFSGEFPANFGRFSPLNSFDISENQFSGAFPKYLCENGRLLYLLALGNRFSGEFPDSYAKCKSLQRLRINENQLSGEIPNGIWALPNVQMIDFGDNGFSGRISPDIGTASSLNQLILANNRFSGKLPSELGSLANLGKLYLNGNEFSGKIPSELGALKQLSSLHLEENSLTGSIPAELGKCARLVDLNLAWNSLSGNIPDSFSLLTYLNSLNLSGNKLTGSLPVNLRKLKLSSIDLSRNQLSGMVSSDLLQMGGDQAFLGNKGLCVEQSYKIQLHSGLDVCTGNNDPKRVAKEKLFLFCIIASALVILLVGLLVVSYRNFKHNESYAENELEGGKEKDLKWKLESFHPVNFTAEDVCNLEEDNLIGSGGTGKVYRLDLKRNGGPVAVKQLWKGSGVKVFTAEIEILRKIRHRNIMKLYACLKKGGSSFLVLEYMSNGNLFQALHRQIKEGVPELDWHQRYKIALGAAKGIAYLHHDCSPPIIHRDIKSTNILLDEEYEPKIADFGVAKIADNSSTESYSSCFAGTHGYIAPELAYTLKVTEKSDIYSFGVVLLELVTGRRPIEEEYGEGKDIVYWVGTHLSDQENVQKLLDRDIVSDLVQEDMLKVLKVAILCTNKLPTPRPTMRDVVKMIIDADSCTLKSPESNPEKNVKPLL* 975
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1897 974 ProSiteProfiles Protein kinase domain profile. 679 959 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi18g1897 974 ProSitePatterns Protein kinases ATP-binding region signature. 685 708 IPR017441 GO:0005524
Vvi18g1897 974 SUPERFAMILY Protein kinase-like (PK-like) 673 951 IPR011009 -
Vvi18g1897 974 Gene3D Ribonuclease Inhibitor 310 594 IPR032675 -
Vvi18g1897 974 ProSitePatterns Serine/Threonine protein kinases active-site signature. 801 813 IPR008271 GO:0004672|GO:0006468
Vvi18g1897 974 SUPERFAMILY L domain-like 56 304 - -
Vvi18g1897 974 Gene3D Phosphorylase Kinase; domain 1 669 753 - -
Vvi18g1897 974 Gene3D Ribonuclease Inhibitor 27 176 IPR032675 -
Vvi18g1897 974 Pfam Leucine rich repeat N-terminal domain 30 66 IPR013210 -
Vvi18g1897 974 SMART serkin_6 679 924 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi18g1897 974 Gene3D Transferase(Phosphotransferase) domain 1 754 967 - -
Vvi18g1897 974 FunFam Receptor-like protein kinase HSL1 291 594 - -
Vvi18g1897 974 FunFam Leucine-rich repeat receptor protein kinase EMS1 206 290 - -
Vvi18g1897 974 Gene3D Ribonuclease Inhibitor 238 307 IPR032675 -
Vvi18g1897 974 Gene3D Ribonuclease Inhibitor 177 237 IPR032675 -
Vvi18g1897 974 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 242 951 - -
Vvi18g1897 974 Pfam Protein kinase domain 680 949 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi18g1897 974 FunFam Leucine-rich receptor-like protein kinase family protein 669 753 - -
Vvi18g1897 974 FunFam leucine-rich repeat receptor-like protein kinase TDR 754 963 - -
Vvi18g1897 974 SUPERFAMILY RNI-like 254 565 - -
Vvi18g1897 974 FunFam Probable inactive receptor kinase RLK902 27 181 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g1897 Vvi-Chr18 26026221 26029884 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g1897 13 964 Receptor kinase-like Gene Family AT1G72180 56.133 0.0 1046
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Vvi18g1897 Pkinase 2.7e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1897 - - vvi:100260256 1852.03