Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1896 ATGGCTTTTCCTTCTTCTTCTTCTTCTTCTTCTCAAGGGAGTTATGATGTGTTCTTGAGCTTTAGAGGAGAAGACACCCGCAATAACTTCACTGCCCATCTCTATCAGGAGTTGCGCACTAAAGGAATCAACACTTTCATAGATGATGACAAGCTTGAGAGAGGCCGGCTCATATCTCCTGCCCTTGTTACAGCTATTGAGAACTCCATGTTTTCCATCATTGTTTTATCAGAAAATTATGCATCTTCTAAATGGTGTCTGGAGGAGCTTGCAAAGATACTAGAGTGCATGAAAACCAGGGGACAGAGGGTTCTCCCAATTTTCTATAATGTGGATCCCTCAGATGTGAAAAAACAGAGGGGAAAATTTGGAGCAGCCTTAGCTGAACATGAGAAGAATTTGACGGAGAATATGGAGAGGGTGCAGATTTGGAAGGATGCTCTCACTCAAGTTGCAAATTTATCTGGTTGGGAATCAAGGAATAAGAATGAGCTTCTACTAATCAAGGAAATCGTTAAGCATGTTTTCAATAAATTGATAAATATATGTAGTGGTGATACTGAGAAACTGGTTGGAATAGATGCTCGCATACAAGAAATAAAAATGCGATTACGTTTGGAATCGGATGATGTTGGTATGATAGGAATTTGGGGCATGGGCGGAATAGGGAAAACAACCCTTGCTAGAGCTCTTTACAACGAAATCTCAAGACAATTTGAAGCACACTCTTTTTTGGAAGATGTTGGAAAGGTTTTGGTTAATAAGGGTTTAATCAAATTACAACAAATATTTCTTTATGATCTATTGGAGGAAAAAGATCTAAATACAAAGGGATTCACATTTATAAAGGCTAGACTCCATTCAAAAAAGGCCCTTGTTGTTCTCGACAATGTGAATGATCCAAAAATATTGGAATGCTTAGTTGGAAATTGGGATTGGTTTGGTCGAGGAAGTAGAATTATTATAACGGCTAGAGATAAACATTTGTTAATTGCACATGGTGTCCTTTGTTATCAGGTTCCAACATTTAATTATGATGAAGCTTATGGGTTCATTAAACGTCATTCGTTAAAACATGAGCTTCTTATTGGTGATTTCTTGGAGCTTTCTAAAGAAATGATAGATTATGCTAAAGGCCTTCCGCTGGCTCTTAAAGTTTTATGTTCTTCTTTATTTGGCATGAGCAAAAAAGAACGGAGAAATCAGTTGGACAAATTGAAAAGTACTCTTCATAAGAAAATTGAGGAAGTACTTAGAATCAGTTATGATGGGTTAGATGATAAAGAGAAGAATATATTTTTGGATATTGCATGTTTCTTTAAAGGAGAAGACAAAGATTATGTAATTGAAATATTGGATGGTTGCGGCTTTTTCTCATCATGTGGAATAAGAACTCTCGTTAATAAATCTTTGATAAGTATTTATGGGAATAAGCTTGAGATGCATGACTTAATACAAGAAATGGGTATAGAAATTGTTCGCCAACAATTTGTTCAAGAGCTCGGCAAACGTAGCAGATTATGGTTCCATGAAGATATCATTGATGTTCTTGAAAAGTTGAAATGCATGGATCTTAGTCACTCTAAGTACTTAATAGAAACCCCAAATCTCTCAAGAGTCACCAACCTGGAACGGTTAGTTTTAGAAGATTGTGTGTCTCTATGTAAGGTTCACCCATCACTTAGAGATTTGAAGAATCTCAATTTTTTGAGTTTTAAAAACTGCAAAATGCTCAAGAGTCTTCCAAGCGGCCCTTATGACTTGAAATCCCTTGCCACATTGATTCTTTCTGGCTGCTCAAAATTTGAACAATTTCCGGAGAACTTTGGGTACTTAGAAATGTTAAAGAAACTTTATGCAGATGGAACTGCACTAAGAGAACTACCCTCCTCTTTGTCTTCGTTGAGAAACCTTGAGATATTATCTTTTGTGGGATGTAAGGGACCACCATCTGCCTCATGGTTGTTTCCAAGAAGAAGTTCCAATTCCACTGGTTTCATATTGCATAATTTGTCAGGCTTATGCTCTTTAAGAAAGCTAGACCTAAGTGACTGCAATTTGTCAGATGAAACAAACCTTAGTTGTCTTGTTTACTTATCTTCGTTGAAAGATTTATATTTATGTGAGAACAACTTTGTTACGTTGCCAAACCTCAGTCGACTTTCACGCTTGGAACGTTTTCGGTTGGCAAATTGCACAAGACTTCAAGAACTGCCAGATCTCCCATCAAGCATTGTTCAAGTGGATGCAAGAAATTGCACGTCATTGAAAAATGTCTCGCTTCGAAATGTCCAGTCATTCCTTCTAAAGAATCGCGTAATCTGGGATCTAAACTTCGTTTTGGCATTAGAAATATTGACTCCTGGGAGTAGACTACCAGATTGGATAAGGTATCAGAGCTCAGGGAAGGAAGTAATAGCAGAGCTATCTCCAAATTGGTTTAATTCCAACTTCCTGGGTTTTGGGTTTGCAAACGTCGTTCCCAAGTTTAGTAACCTTGGTTTGTCACGCTTTGTATACTGTTACTTGTCCCTTTCAAGATCCAGTGACTTTACTCACGGCTTCCGAGTCGTTCCTTATCCGCATTTTTTGTGTTTAAATCGTCAGATGCTAACTTTGGATCACGTATACCTGCTTTATGTACCACTTTCTTCCTTCAGCGATTGGTGTCCATGGGGTCACATCATCAATTGGCATCAAGTGACTCATATCAAGGCATCGTTCCAGCCACGTTCTGACCAATTTGGTGAAGTTAAGCGGTATGGAATTGGTCTGGCGTACAGTAATGAAGATGTGAATCACAACAACCCCCCAATGATCCAATTCGGCTCTATTTCCTCTGCTTCCTCTCCTCCTCCTAATAAGTCAACAGTTGTCCTTACAGAAATCCATGATGAGGAACCCAGTGGAAGTGTTGATGGCTCGGAATTGGATAATTCTGGGTACTATACTGCTGACGAGGGGGAACCAGCTGAAACTGCTTGCTCTAAGGATCCGTCTGAATCAGAGATGCAGCCACAGAAACGCTTGAAATGCAGCCATTTTCAGGACATCCCTTGA 3060 0.3886 MAFPSSSSSSSQGSYDVFLSFRGEDTRNNFTAHLYQELRTKGINTFIDDDKLERGRLISPALVTAIENSMFSIIVLSENYASSKWCLEELAKILECMKTRGQRVLPIFYNVDPSDVKKQRGKFGAALAEHEKNLTENMERVQIWKDALTQVANLSGWESRNKNELLLIKEIVKHVFNKLINICSGDTEKLVGIDARIQEIKMRLRLESDDVGMIGIWGMGGIGKTTLARALYNEISRQFEAHSFLEDVGKVLVNKGLIKLQQIFLYDLLEEKDLNTKGFTFIKARLHSKKALVVLDNVNDPKILECLVGNWDWFGRGSRIIITARDKHLLIAHGVLCYQVPTFNYDEAYGFIKRHSLKHELLIGDFLELSKEMIDYAKGLPLALKVLCSSLFGMSKKERRNQLDKLKSTLHKKIEEVLRISYDGLDDKEKNIFLDIACFFKGEDKDYVIEILDGCGFFSSCGIRTLVNKSLISIYGNKLEMHDLIQEMGIEIVRQQFVQELGKRSRLWFHEDIIDVLEKLKCMDLSHSKYLIETPNLSRVTNLERLVLEDCVSLCKVHPSLRDLKNLNFLSFKNCKMLKSLPSGPYDLKSLATLILSGCSKFEQFPENFGYLEMLKKLYADGTALRELPSSLSSLRNLEILSFVGCKGPPSASWLFPRRSSNSTGFILHNLSGLCSLRKLDLSDCNLSDETNLSCLVYLSSLKDLYLCENNFVTLPNLSRLSRLERFRLANCTRLQELPDLPSSIVQVDARNCTSLKNVSLRNVQSFLLKNRVIWDLNFVLALEILTPGSRLPDWIRYQSSGKEVIAELSPNWFNSNFLGFGFANVVPKFSNLGLSRFVYCYLSLSRSSDFTHGFRVVPYPHFLCLNRQMLTLDHVYLLYVPLSSFSDWCPWGHIINWHQVTHIKASFQPRSDQFGEVKRYGIGLAYSNEDVNHNNPPMIQFGSISSASSPPPNKSTVVLTEIHDEEPSGSVDGSELDNSGYYTADEGEPAETACSKDPSESEMQPQKRLKCSHFQDIP* 1020
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1896 1019 Gene3D Ribonuclease Inhibitor 658 833 IPR032675 -
Vvi18g1896 1019 MobiDBLite consensus disorder prediction 966 1019 - -
Vvi18g1896 1019 Pfam TIR domain 15 185 IPR000157 GO:0007165
Vvi18g1896 1019 FunFam Disease resistance protein (TIR-NBS-LRR class) 11 181 - -
Vvi18g1896 1019 ProSiteProfiles TIR domain profile. 13 179 IPR000157 GO:0007165
Vvi18g1896 1019 Gene3D Ribonuclease Inhibitor 509 656 IPR032675 -
Vvi18g1896 1019 Gene3D - 184 335 IPR027417 -
Vvi18g1896 1019 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 179 436 IPR027417 -
Vvi18g1896 1019 Pfam C-JID domain 788 930 IPR045344 -
Vvi18g1896 1019 ProSiteProfiles Leucine-rich repeat profile. 676 697 IPR001611 GO:0005515
Vvi18g1896 1019 Gene3D - 345 426 IPR042197 -
Vvi18g1896 1019 PRINTS Disease resistance protein signature 285 299 - -
Vvi18g1896 1019 PRINTS Disease resistance protein signature 377 391 - -
Vvi18g1896 1019 PRINTS Disease resistance protein signature 586 602 - -
Vvi18g1896 1019 PRINTS Disease resistance protein signature 213 228 - -
Vvi18g1896 1019 SUPERFAMILY Toll/Interleukin receptor TIR domain 5 157 IPR035897 -
Vvi18g1896 1019 Gene3D - 12 183 IPR035897 -
Vvi18g1896 1019 ProSiteProfiles Leucine-rich repeat profile. 701 722 IPR001611 GO:0005515
Vvi18g1896 1019 SMART till_3 14 154 IPR000157 GO:0007165
Vvi18g1896 1019 SUPERFAMILY L domain-like 481 765 - -
Vvi18g1896 1019 Coils Coil 396 416 - -
Vvi18g1896 1019 MobiDBLite consensus disorder prediction 991 1010 - -
Vvi18g1896 1019 Pfam NB-ARC domain 196 416 IPR002182 GO:0043531
Vvi18g1896 1019 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 519 647 IPR044974 GO:0006952
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g1896 Vvi-Chr18 26016973 26021251 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g1896 10 809 WRKY Transcription Factor Family AT4G12020 30.178 5.91e-67 244
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1896 - - vri:117929824 1330.85