Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1895 ATGTCGGAGGTGTTCAATAGTGTGCTTAAAGGGGCTCGTAGCTTACCCATAACTGCTTTGGTTCAATTGACATTTTTTCGGCTAAATAGTTACTTTGTTGTGAGAAGGGAACAAGGTGCTAATCGACTTGCTTCAAATGAGGAATACACTCTATATGTTGATGCTAAGATTAAGGCAAATGTGGTTAAGGCGGGATCTCATGAGATTGTTTTATATGATCACATTCGAGGACACTTTCATGTGAAGACTAATAAGGGTACTAAGAGTAGCTCAACTCGTGGTCGAACATATCGCATCAACTTACAGGAGTATGCATGCACATGTGGGAGCTATGATGTGTTCTTGAGCTTTAGAGGAGAAGACACCCGCAATAACTTCACTGCCCATCTCTATCAGGAGTTGCGCACTAAAGGAATCAACACTTTCATAGATGATGACAAGCTTGAGAGAGGCCGGGTCATATCTCCTGCCCTTGTTACAGCTATTGAGAACTCCATGTTTTCCATCATTGTTTTATCAGAAAATTATGCATCTTCTAAATGGTGTCTGGAGGAGCTTGCAAAGATACTAGAGTGCATGAAAACCAGGGGACAGAGGGTTCTCCCAATTTTCTATAATGTGGATCCCTCAGATGTGAGAAATCATAGGGGAAAATTTGGAGCAGCCTTAGCTGAACATGAGAAGAATTTGACGGAGAATATGGAGAGGGTGCAGATTTGGAAGGATGCTCTCACTCAAGTTGCAAATTTATCTGGTTGGGAATCAAGGAATAATGGTGATACTGAGAAACTGGTTGGAATAGATGCTCGAATACAAGAAATAAAAATGCGATTACGTTTGGAATCGGATGATGTTGGTATGATAGGAATTTGGGGCATGGGCGGAATAGGGAAAACAACCCTTGCTAGAGCTCTTTACAATGAAATCTCAAGACAATTTGAAGCACACTCTTTTTTGGAAGATGTTGGAAAGGTTTTGGCTAATGAGGGATTAATCAAATTACAACAAATATTTCTTTCTAGCCTATTGGAGGAAAAAGATCTAAATATGAAAGGACTCACATCTATAAAGGCTAGACTCCATTCAAAAAAGGTCCTTGTTGTTCTCGACAATGTGAATGACCCAACAATATTTGAATGCTTAATTGGAAATCAGGATTGGTTTGGTCGAGGAAGTAGAATTATTATAACGGCTAGAGATAAATGTTTAATTTCACATGGTGTTGATTATTATGAGGTCCCAAAATTTAATTCGGATGAAGCTTATGAGTTCATTAAATGTCATTCGTTAAAACATGAACTTCTTCGAGGTGATTTCATGGAGCTTTCAACATCAATGATAGGTTATGCTCAAGGCCTTCCATTGGCTTTGAAAGTTTTACGTCCTATTTTATTTAGCATGAGCAAAGAAGAATCAAGAAATCAATTAGACAAACTGAAAAGTACTCTTAATAAGAAAATTGAGGAAGTACTTAGAATCAGTTACGATGGGTTAGATGATAAAGAGAAGAATATATTTTTGGATATTGCATGTTTCTTTAAAGGAGAAGATAAAGATTATGTAATTGAAATATTGGACGGTTGTGGCTTTTTCCCATTATGTGGAATAAGGTCTCTCATTGATAAATCTTTGATAAGTATTTATGGAAATAAGTTTCAGATGCATGACTTAATACAAGAAATGGGTTTGGAAATTGTTCGCCAACAATCTCTTCAAGAGCTCGGCAAACGTAGCAGATTGTTATTCCATGAAGATATCTATGATGTATTGAAAAAAAATACGGGAAGTGAAAAAATTGAAGGCATATTCCTCAACTTGTTTCATTTACAAGAGACAATAGACTTTACCACACAAGCCTTTGCAGGGATGAGTAAACTTAGATTGCTCAAAGTCTATCAATCTGACAAAATTTCAAGAAACTCTGAAGATACCTTTATGAAGGAGAATTTTAAAGTTCGTTTCTCTTCGAATTTTAAATTTTGTTACGATGAATTGAGGTACTTAGATTTGTATGGATACTCCTTGAAATCATTGCCTAATGATTTCAATGCAAAGAATCTTGTTCACCTCAGCATGCCTTGTAGCCGCATTGAACAACTTTGGAAAGGAATCAAGGTTCTTGAAAAGTTGAAACGCATGGATCTTAGTCACTCTAAGTACTTAATAGAAACCCCAAATCTCTCAAGAGTCACCAACTTGGAACGGTTAGTTTTAGAAGATTGTGTGTCTCTATGTAAGGTTCACCCATCACTTAGAGATTTGAAGAATCTCAAATTTTTGAGTTTGAAAAACTGCAAAATGCTCAAGAGTCTTCCAAGCGGCCCTTATGACTTGAAATCCCTTGAAATATTGATTCTTTCGGGCTGCTCAAAATTTGAACAATTTCTGGAGAACTTTGGGAACTTAGAAATGTTAAAGGAACTTTATGCAGATGGAACTGCACTAAGAGAACTACCCTCCTCTTTGTCTTTGTCGAGAAACCTTGTGATATTATCTTTGGAGGGATGTAAGGGACCACCATCTGCCTCGTGGTGGTTTCCTAGAAGAAGTTCCAATTCCACTGGTTTCAGATTGCATAATTTGTCAGGCTTATGCTCTTTAAGTACGCTAAACCTAAGTTACTGCAATTTGTCAGATGAAACAAACCTTAGTAGTCTTGTTTTGTTATCTTCATTGGAATATTTACATTTATGTGGGAACAACTTTGTTACGTTGCCAAACCTCAGTCGACTTTCACGCTTGGAAGATGTTCAGTTGGAAAATTGCACAAGACTTCAAGAACTGCCAGATCTCCCATCAAGCATTGGTCTGTTGGATGCAAGAAATTGCACATCATTGAAAAATGTCCAGTCACACCTAAAGAATCGCGTAATCAGGGTTCTAAACTTGGTTTTGGGATTATACACGTTGACTCCTGGGAGTAGACTACCAGATTGGATAAGGTATAAGAGCTCAGGGATGGAAGTAATAGCAGAGCTACCTCCAAATTGGTTTAATTCCAACTTCCTGGGTTTTTGGTTTGCAATTGTCGTTCCCAAGTTTAGTGGTCTAGATCGTTTTCACGCTGTATCCTGTTCCTTGTCCCTTTCAAGATCCAGTGGCTTTACTCACTACTTCACATTCTGTCCTCATTCGTCTTGTCAGATGCTAATGTTGGATCACGTAGCACTGTTTTATTTTTCACTTTCTTTCCTCAGCGATTGGTGTGGACACATCAATTGGCATCAAGTGACTCACATCAAGGCATTGTTCTACCCACATTCTGTCCAATTTAGTGAACCTAAGTGGAATGGAATTGGTCTGGCGTACAGTAATGAAGATGTGAATCACAACAACCCCCCAATGATCCAATTCGGCTCTATTTCCTCTGCTTCCTCTGCTCCTAATAAGTCAACAGTTGTCCTTACAGAAATCCATGATGAGGAACCCAGTGGAAGTGTTGATGGCTCGGAATTGGATAATTCTGGGTACTGTACTGCTGACGAGGGGGAACCAGCTGATACTCTTGCTCTAAGGATCCGTCTGAATCAGAGATGCAGCCACAGAAACGCTTGA 3555 0.3857 MSEVFNSVLKGARSLPITALVQLTFFRLNSYFVVRREQGANRLASNEEYTLYVDAKIKANVVKAGSHEIVLYDHIRGHFHVKTNKGTKSSSTRGRTYRINLQEYACTCGSYDVFLSFRGEDTRNNFTAHLYQELRTKGINTFIDDDKLERGRVISPALVTAIENSMFSIIVLSENYASSKWCLEELAKILECMKTRGQRVLPIFYNVDPSDVRNHRGKFGAALAEHEKNLTENMERVQIWKDALTQVANLSGWESRNNGDTEKLVGIDARIQEIKMRLRLESDDVGMIGIWGMGGIGKTTLARALYNEISRQFEAHSFLEDVGKVLANEGLIKLQQIFLSSLLEEKDLNMKGLTSIKARLHSKKVLVVLDNVNDPTIFECLIGNQDWFGRGSRIIITARDKCLISHGVDYYEVPKFNSDEAYEFIKCHSLKHELLRGDFMELSTSMIGYAQGLPLALKVLRPILFSMSKEESRNQLDKLKSTLNKKIEEVLRISYDGLDDKEKNIFLDIACFFKGEDKDYVIEILDGCGFFPLCGIRSLIDKSLISIYGNKFQMHDLIQEMGLEIVRQQSLQELGKRSRLLFHEDIYDVLKKNTGSEKIEGIFLNLFHLQETIDFTTQAFAGMSKLRLLKVYQSDKISRNSEDTFMKENFKVRFSSNFKFCYDELRYLDLYGYSLKSLPNDFNAKNLVHLSMPCSRIEQLWKGIKVLEKLKRMDLSHSKYLIETPNLSRVTNLERLVLEDCVSLCKVHPSLRDLKNLKFLSLKNCKMLKSLPSGPYDLKSLEILILSGCSKFEQFLENFGNLEMLKELYADGTALRELPSSLSLSRNLVILSLEGCKGPPSASWWFPRRSSNSTGFRLHNLSGLCSLSTLNLSYCNLSDETNLSSLVLLSSLEYLHLCGNNFVTLPNLSRLSRLEDVQLENCTRLQELPDLPSSIGLLDARNCTSLKNVQSHLKNRVIRVLNLVLGLYTLTPGSRLPDWIRYKSSGMEVIAELPPNWFNSNFLGFWFAIVVPKFSGLDRFHAVSCSLSLSRSSGFTHYFTFCPHSSCQMLMLDHVALFYFSLSFLSDWCGHINWHQVTHIKALFYPHSVQFSEPKWNGIGLAYSNEDVNHNNPPMIQFGSISSASSAPNKSTVVLTEIHDEEPSGSVDGSELDNSGYCTADEGEPADTLALRIRLNQRCSHRNA* 1185
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1895 1184 Gene3D - 416 499 IPR042197 -
Vvi18g1895 1184 ProSiteProfiles Leucine-rich repeat profile. 866 887 IPR001611 GO:0005515
Vvi18g1895 1184 Pfam Leucine Rich Repeat 686 705 IPR011713 -
Vvi18g1895 1184 FunFam Disease resistance protein (TIR-NBS-LRR class) 107 278 - -
Vvi18g1895 1184 PRINTS Disease resistance protein signature 287 302 - -
Vvi18g1895 1184 PRINTS Disease resistance protein signature 359 373 - -
Vvi18g1895 1184 PRINTS Disease resistance protein signature 752 768 - -
Vvi18g1895 1184 PRINTS Disease resistance protein signature 450 464 - -
Vvi18g1895 1184 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 111 806 IPR044974 GO:0006952
Vvi18g1895 1184 Gene3D Ribonuclease Inhibitor 602 799 IPR032675 -
Vvi18g1895 1184 Pfam C-JID domain 972 1105 IPR045344 -
Vvi18g1895 1184 Gene3D - 254 409 IPR027417 -
Vvi18g1895 1184 ProSiteProfiles Leucine-rich repeat profile. 891 912 IPR001611 GO:0005515
Vvi18g1895 1184 MobiDBLite consensus disorder prediction 1140 1159 - -
Vvi18g1895 1184 Pfam NB-ARC domain 270 489 IPR002182 GO:0043531
Vvi18g1895 1184 ProSiteProfiles TIR domain profile. 109 275 IPR000157 GO:0007165
Vvi18g1895 1184 Pfam TIR domain 111 254 IPR000157 GO:0007165
Vvi18g1895 1184 Coils Coil 469 489 - -
Vvi18g1895 1184 SUPERFAMILY L domain-like 553 959 - -
Vvi18g1895 1184 Gene3D - 79 248 IPR035897 -
Vvi18g1895 1184 Gene3D Ribonuclease Inhibitor 800 963 IPR032675 -
Vvi18g1895 1184 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 260 509 IPR027417 -
Vvi18g1895 1184 SUPERFAMILY Toll/Interleukin receptor TIR domain 110 253 IPR035897 -
Vvi18g1895 1184 SMART till_3 110 250 IPR000157 GO:0007165
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g1895 Vvi-Chr18 25979391 26000298 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g1895 111 831 WRKY Transcription Factor Family AT4G12020 36.304 1.70e-101 353
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1895 - - vvi:100265505 1291.56