Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1891 ATGGCTTCTCCCTCTAAGTTCTTGCTTCTCCTCACCCTCTCTTGCCTCACTTGTCTTCCATTCATTTCTTCCCTCTCCTCTGTCTCAATATCTGAGACCTCTAACCAGACACTCATCTGTGCGTTACTGGAGTCCTCTCGTCTCAACTGTACTAGCTTTCCCACCGGAATTCAGATTCCCAGTGTTAATAGATCATTTTCCGGGATTGTGGCTGGAGACGGTTTCCAATGTGTTTTAAGTTTCCCCTCCGCTACAATCATGCTCTGCTATAGGTTCTCTGCTAATGGTACTAATATGCACTCTAAACGACTCTACTACAACGACTCAGCTCTCACTGAAGTTGCTGCAGGAAACACCCATGTTTGCGGCCTTGTCAATGGTACTAATATCCTTCACTGCTGGCAATGGCGAGGTTTCAATACCAGCGTACAGTCAGACTTTTCGGGTATTGCCGTGGGAGAGGGTTTCGTATGTGGGTTATCCAGCAGCGGAAGGATTACATGCATAGGAACTAATTCCAGTTCTAGTTCTACCATCCGCGATCGTGTGCCTAGTGGGAGCTTTCAGAAGGTTGCGGCAGGGTTCCGCCACGCTTGTGCCATCTATAGGAATCAAAGTTTGGTTTGTTGGGGAGAGACGGTTGGTGAGGAACCACAGGGTGAGTTCGTGTCACTGGCCTTGGGAGAGAATCGGAGCTGTGCTATGAGGGGGAATGGAACAGTTGTTTGTTGGGGGGAGAATGGTTTCAGTTTGCCGGAGAGTTTGCGAGAGACGGTTTTTATGACGATTGAAGCAAAGCGCAGTGTTTTCTGTGGAGTGGACCAATATAACTTTTCATTGCTGTGTTGGGGGAATGAGATCTTTGACTCAAATTCTATGGTTTTCCCGAAGGTATTGCCAGGCTCATGTACAAGCAGTGAATGTCCGAATGGTGTAGTGCCAGGTTCCGGCAGCATGTGTGGACGAGGACATATCTGCAACGCTTACCAGAACCGAACCTTGGTAGAAGGTCCATCACAACCTCCATCACCGCCTCCAGAAGTGCGGAACAGAAGTGGTTGGAATGATAAAATGGTCGCCTTTCTGGTGGTGGGGTGTGTTGGGTCGGCCTCGTTTTTGGCTGTCATTTGTTTCTTTCTATTCCGGTATTGCAAGGGTAGGGGATGCAGCAAGGTCCATGATTCGGGTCGTTTGGATGAGGCCGGGATGCCACCAGAGCACGGTCTAAGCCAACGACAGACAGTACAAGCTCAGCGGGCAGCACCTGTCTTAGAGAAGCGGCTGAGCCAGTTGGTTAGCTTAGGAAATGGGGGTCGCTTGGAGGAATTCTCTCTGCAAGAGCTACGCCAAGCTACAAATGATTTCTCACAGGAACACAGAATCGGAACAGGTAGCTTTGGCTGTGTCTACCGTGCCACCCTGGAGGATGGGAAAGAAGTTGCCATCAAGCGAGCTGAAGTATCAACTACTTCATCAAATGCAGTTGGCACCAGACGCCAGGAAGACAAGGACACTGCCTTCGTTAGTGAGCTAGATTCTCTGTCCCGACTCAATCATCGAAACCTTGTCCGACTATTAGGATATTGCGAAGACTACAATGAGAAGATACCAGCCTACGAGCGCATCCTAGTCTATGAGTACATGAACAATGGCACCCTCCATGACCATCTTCACAAGCTCCACAGCTCGCCTCTAATGTCATGGACCAACAGGCTCAGAGTGGCACTAGATGCGGCTAGGGGGATCGAGTACCTACACATGTATGCAGTCCCCCAAATCATACACCGTGATATCAAGTCATCAAACATATTGCTTGATGCGTCATTGACAGCCAAGGTTTCTGATTTTGGACTATCTCTGATGGGCCCTGAGGATGAGGATTCACACCTTTCTCTCCATGCCGCTGGCACAGTTGGCTACATGGATCCCGAGTACTATAGGCTTCAACAGTTGACCCCTAAGAGTGATGTGTATAGCTTTGGAGTACTACTGCTCGAGTTATTGTCAGGGCACAAAGCGATACATAAGAACGAGAATGGGGTGCCTAGAAATGTAGTGGATCTTGTTGTTCCCTACATTGTTCAAGATGAAATACACAGGGTGTTGGACCCCAATGTGCCTCCCCCAACCCCATATGAGATAGAGGCAGTTACATACATAGGGTACATAGCAGCAGATTGTGTAACGCTAGAAGGTAGGGACCGGCCATCAATGACTGATATTGTACATAGCCTGGAAAGAGCCCTGGCTGCATGTTTCACACCACCATCTCCAATACCCTCGCCGCCAATTTCGCGGTCCACAACTGGGTCTTTGACGTAG 2322 0.491 MASPSKFLLLLTLSCLTCLPFISSLSSVSISETSNQTLICALLESSRLNCTSFPTGIQIPSVNRSFSGIVAGDGFQCVLSFPSATIMLCYRFSANGTNMHSKRLYYNDSALTEVAAGNTHVCGLVNGTNILHCWQWRGFNTSVQSDFSGIAVGEGFVCGLSSSGRITCIGTNSSSSSTIRDRVPSGSFQKVAAGFRHACAIYRNQSLVCWGETVGEEPQGEFVSLALGENRSCAMRGNGTVVCWGENGFSLPESLRETVFMTIEAKRSVFCGVDQYNFSLLCWGNEIFDSNSMVFPKVLPGSCTSSECPNGVVPGSGSMCGRGHICNAYQNRTLVEGPSQPPSPPPEVRNRSGWNDKMVAFLVVGCVGSASFLAVICFFLFRYCKGRGCSKVHDSGRLDEAGMPPEHGLSQRQTVQAQRAAPVLEKRLSQLVSLGNGGRLEEFSLQELRQATNDFSQEHRIGTGSFGCVYRATLEDGKEVAIKRAEVSTTSSNAVGTRRQEDKDTAFVSELDSLSRLNHRNLVRLLGYCEDYNEKIPAYERILVYEYMNNGTLHDHLHKLHSSPLMSWTNRLRVALDAARGIEYLHMYAVPQIIHRDIKSSNILLDASLTAKVSDFGLSLMGPEDEDSHLSLHAAGTVGYMDPEYYRLQQLTPKSDVYSFGVLLLELLSGHKAIHKNENGVPRNVVDLVVPYIVQDEIHRVLDPNVPPPTPYEIEAVTYIGYIAADCVTLEGRDRPSMTDIVHSLERALAACFTPPSPIPSPPISRSTTGSLT* 774
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1891 773 SMART serkin_6 455 753 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi18g1891 773 ProSitePatterns Protein kinases ATP-binding region signature. 461 483 IPR017441 GO:0005524
Vvi18g1891 773 Pfam Regulator of chromosome condensation (RCC1) repeat 223 249 - -
Vvi18g1891 773 Pfam Regulator of chromosome condensation (RCC1) repeat 190 211 - -
Vvi18g1891 773 Gene3D - 49 297 IPR009091 -
Vvi18g1891 773 Gene3D Transferase(Phosphotransferase) domain 1 548 752 - -
Vvi18g1891 773 SUPERFAMILY RCC1/BLIP-II 106 329 IPR009091 -
Vvi18g1891 773 FunFam probable LRR receptor-like serine/threonine-protein kinase RKF3 548 753 - -
Vvi18g1891 773 ProSitePatterns Serine/Threonine protein kinases active-site signature. 593 605 IPR008271 GO:0004672|GO:0006468
Vvi18g1891 773 CDD STKc_IRAK 461 747 - -
Vvi18g1891 773 Gene3D Phosphorylase Kinase; domain 1 429 547 - -
Vvi18g1891 773 SUPERFAMILY Protein kinase-like (PK-like) 441 766 IPR011009 -
Vvi18g1891 773 PANTHER SERINE/THREONINE-PROTEIN KINASE-LIKE PROTEIN CCR4 180 753 IPR044815 GO:0004674
Vvi18g1891 773 ProSiteProfiles Protein kinase domain profile. 455 749 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi18g1891 773 Pfam Protein tyrosine and serine/threonine kinase 457 745 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g1891 Vvi-Chr18 25936491 25938812 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g1891 24 769 Receptor kinase-like Gene Family AT5G47850 50.779 0.0 682
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CR4L Vvi18g1891 PK_Tyr_Ser-Thr 4.2e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1891 - - vvi:100246469 1535.01