Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Vvi18g1884 | ATGCACAGTGCCATGGCTAGTTTTCACAGCAAAACTGCCCCAGTATTTCAAAAACACTACACAGAACCTTCATGTAGATACACAGGAATCAACAATGGTGGAATTGGAATCAAAGGTTGTGGCAAAAGTTGGAGAATCAACATAGGGAAAACAAGGCTTTTCAAGGGAGGAAGAGGGTCTGTGGTGCAATGCTGCAGCTCTTCTTCAACCCCATCAGCTGAGGATCAAAGGGTATTGAGGCTGGTTGGGAAGGTTGGGTTACGCGAAAAACCGGAGTATGGTAAGGACCAGTTTGGCTGTTTGGTGAATGAGTATGGCTGGAAGGTGAGGAGATTGGTTGAGGAGGATGGTGAGATGAGAAAGGTAGCTCAGGTTCAAGCCCAAGCTTTTCATGTGCCTGTGGCCCTCTTCAATGATCTATTCTTCGAGTTCTTTCAGGCTGAAGTGCTTTCTGGGCTTGTTTACAAACTTAGGAACTCACCTCCAGACAGGTATGCATGCCTGGTTGCTGAGCCTGCTGCTGAGACACAGCAGGAGGTTGTGGGGGTGGTGGATGTCACAGCTTTGAGAGATGAAGCTGTACTTCAGCATCTTGGAGGAGCTGAAGAATATCTTTATGTGTCTGGGATAGCGGTTTTGAACGATTTCAGGAGGCAAAAGGTAGCCACAGCTTTGCTGAAAGCTTGTGACATGCTCTCTATTCTATGGGGCTTTGAGTACCTGGTCTTGAGAGCTTATGAAGATGATTTGGGTGCTCGAAAACTGTACTCAAATTCAGGCTATTCAGTTGTCTCAGGAGATCCGCCATGGACAAGTACTTGGTTGGGGAAAAAACGCCGAGTTGTAATGGTCAAACGCTCTAACCTTCGTGAGTAA | 876 | 0.468 | MHSAMASFHSKTAPVFQKHYTEPSCRYTGINNGGIGIKGCGKSWRINIGKTRLFKGGRGSVVQCCSSSSTPSAEDQRVLRLVGKVGLREKPEYGKDQFGCLVNEYGWKVRRLVEEDGEMRKVAQVQAQAFHVPVALFNDLFFEFFQAEVLSGLVYKLRNSPPDRYACLVAEPAAETQQEVVGVVDVTALRDEAVLQHLGGAEEYLYVSGIAVLNDFRRQKVATALLKACDMLSILWGFEYLVLRAYEDDLGARKLYSNSGYSVVSGDPPWTSTWLGKKRRVVMVKRSNLRE* | 292 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Vvi18g1884 | 291 | PANTHER | N-ALPHA-ACETYLTRANSFERASE | 104 | 287 | - | - | |
| Vvi18g1884 | 291 | CDD | NAT_SF | 173 | 243 | - | - | |
| Vvi18g1884 | 291 | FunFam | Histone acetyltransferase HPA2 and related acetyltransferases | 112 | 288 | - | - | |
| Vvi18g1884 | 291 | SUPERFAMILY | Acyl-CoA N-acyltransferases (Nat) | 107 | 286 | IPR016181 | - | |
| Vvi18g1884 | 291 | Gene3D | - | 103 | 286 | - | - | |
| Vvi18g1884 | 291 | ProSiteProfiles | Gcn5-related N-acetyltransferase (GNAT) domain profile. | 120 | 280 | IPR000182 | GO:0016747 | |
| Vvi18g1884 | 291 | Pfam | Acetyltransferase (GNAT) family | 158 | 261 | IPR000182 | GO:0016747 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Vvi18g1884 | Vvi-Chr18 | 25838075 | 25839399 | Dispersed/Proximal |
Transcription factors information
| Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
|---|---|---|---|---|---|---|---|
| TR | GNAT | Vvi18g1884 | Acetyltransf_1 | 3.9e-07 | CL0257 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Vvi18g1884 | - | - | vvi:100244789 | 578.556 |