Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1883 ATGCGTTCAGAGATAGCTGTGGATGCCATCCATGTTACACCTGATTTTTCTGGAAGTCCTATCACAAATTTTTCTGGCCAGGCCCTGTATAAAAGGTCATTCAAGCTGTGGAGTGAAAGCAAAGGCACAGCATCCTTCAATACGACCTTTGTGCTCAGAATCACTCCGAGGACAGATCCAGGTGGTGAAGGCTTGGCCTTTATCTTAACTGGACGTGCCACTCTTCCAGAGAACAGTGAAGGGAAATGGCTTGGGATCGTGAATGCAAGCACAAATGGATCAGCTGAAAACCAGATAGTGGCAGTAGAATTTGACACAAGGAAAAGCTACATGGAGGACCTGAGCAATAACCACATTGGCGTGAACGTGAACAGCGTCTACTCAATCAAACAGGCGAACCTAAGCATCAATCTTTCAAGTGGCACCGCTATAACAGTGAAGGTTCAATATGATGGGAAAATTTTGAGGGCATTTGTTGGAACGCAGATGAAGGCTCCAGCAATCGCTCTTCCTATTAACCTCTCAGACCATCTGCCACAGAAAGTTTTTGTGGGATTCTCGGCTTCAACAGGGAATCACACTCAACTCAACTGTGTAAGGTCATGGGAATTCAGTGGTTCGAGTGTAGATGAAGATCCTGACCTATTATGGGTCTGGATCATGGTTCCAGTAACAGTTTTGGTTAGTGGGGTCGCCTTCTATTTCTCTTGGAAATGGAATTGTGGAAAGCAGGAGGAAGAGGAGGATGATCCGAGGGTAGAACAACAGATTCAAGGCTCATCCACAGCTCCAAGGAAATTTCGACTGAAAGAACTTAAAGCTGCTACGGAAAATTTCAACTCCAAGAATGAGCTTGGCAAAGGTGGATTTGGGACAGTCTACAAAGGATTCTTGAAGAATAAGGAGGTAGCTGTGAAAAGATTTTCAAGGAATTCACATCAAAGCAAGCAAGATTTTATAGCAGAAGTCACAACAATCAGCAATCTACATCACAAAAATCTTGTCAAATTAGTTGGATGGTGCTATGAAAAAAGGGAACTTCTTCTAATATACGAGTTCATGCCAAATACGAGCCTAGACAAGCTCATATTCTGCAAAGAATCCGATGTGGAGAATCGAATCACACTGAATTGGGAAACAAGATATCTAATCATTTGCGGGGTGGCTCAGGCATTGGATTATCTTCACAATGGATGCGAGAAGAGGGTGCTTCACCGAGACATAAAAGCAAGCAATATAATGTTGGATTCAGATTTCAACGCCCGGTTGGGGGATTTTGGATTGGCAAGAATCATTCAACTGAGTGATCAAACTCACCACTCAACAAAAGAGATTGCAGGGACACCTGGGTATATGGCTCCAGAAAGTTTTCATACTGGTAGGGCTGCCGTTGAAACCGATGTATATGCCTTCGGTATTCTTGTACTGGAAGTTGTCTGTGGAAGAAAGCCTGGAGATCAAAGCTTGAACAACAAATACAACAACGGGATAGTGGATTGGGTATGGGAATACTATAGGAGACAAAGAATTCTGGATGTCTTAGATTTGCGACTGAATGGGGTTTTCCACAAGGAGCAGACTGAATATGCACTGATGTTGGCATTGTCCTGTTGTCATCCCAACCCGTACCAGAGGCCATCCATGAGAATTGCTTTAAGGGTTCTTACAGGAGAGGTAGACCCACCAGTTATCCCCATTGAAAAACCTCCTTTTGTGTGGCCGGCCACACCTCCGGACTCTTTCAGGGAGGATTTGGAGTATCCTCCCACAGGGGGCCTGCTCTCTCCACCTTCAGAACTCATTGGGAGATAA 1812 0.4448 MRSEIAVDAIHVTPDFSGSPITNFSGQALYKRSFKLWSESKGTASFNTTFVLRITPRTDPGGEGLAFILTGRATLPENSEGKWLGIVNASTNGSAENQIVAVEFDTRKSYMEDLSNNHIGVNVNSVYSIKQANLSINLSSGTAITVKVQYDGKILRAFVGTQMKAPAIALPINLSDHLPQKVFVGFSASTGNHTQLNCVRSWEFSGSSVDEDPDLLWVWIMVPVTVLVSGVAFYFSWKWNCGKQEEEEDDPRVEQQIQGSSTAPRKFRLKELKAATENFNSKNELGKGGFGTVYKGFLKNKEVAVKRFSRNSHQSKQDFIAEVTTISNLHHKNLVKLVGWCYEKRELLLIYEFMPNTSLDKLIFCKESDVENRITLNWETRYLIICGVAQALDYLHNGCEKRVLHRDIKASNIMLDSDFNARLGDFGLARIIQLSDQTHHSTKEIAGTPGYMAPESFHTGRAAVETDVYAFGILVLEVVCGRKPGDQSLNNKYNNGIVDWVWEYYRRQRILDVLDLRLNGVFHKEQTEYALMLALSCCHPNPYQRPSMRIALRVLTGEVDPPVIPIEKPPFVWPATPPDSFREDLEYPPTGGLLSPPSELIGR* 604
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1883 603 SUPERFAMILY Protein kinase-like (PK-like) 262 590 IPR011009 -
Vvi18g1883 603 MobiDBLite consensus disorder prediction 584 603 - -
Vvi18g1883 603 CDD lectin_legume_LecRK_Arcelin_ConA 8 207 IPR001220 GO:0030246
Vvi18g1883 603 Pfam Protein kinase domain 280 552 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi18g1883 603 SUPERFAMILY Concanavalin A-like lectins/glucanases 9 205 IPR013320 -
Vvi18g1883 603 Gene3D Transferase(Phosphotransferase) domain 1 354 560 - -
Vvi18g1883 603 ProSiteProfiles Protein kinase domain profile. 279 564 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi18g1883 603 Pfam Legume lectin domain 8 211 IPR001220 GO:0030246
Vvi18g1883 603 CDD STKc_IRAK 285 557 - -
Vvi18g1883 603 Gene3D Phosphorylase Kinase; domain 1 264 353 - -
Vvi18g1883 603 ProSitePatterns Protein kinases ATP-binding region signature. 285 306 IPR017441 GO:0005524
Vvi18g1883 603 ProSitePatterns Legume lectins beta-chain signature. 100 106 IPR019825 -
Vvi18g1883 603 FunFam Probable L-type lectin-domain containing receptor kinase S.5 1 213 - -
Vvi18g1883 603 FunFam probable L-type lectin-domain containing receptor kinase S.5 354 561 - -
Vvi18g1883 603 SMART serkin_6 279 555 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi18g1883 603 FunFam Probable L-type lectin-domain containing receptor kinase S.5 264 353 - -
Vvi18g1883 603 PANTHER - 24 562 - -
Vvi18g1883 603 ProSitePatterns Serine/Threonine protein kinases active-site signature. 403 415 IPR008271 GO:0004672|GO:0006468
Vvi18g1883 603 Gene3D - 2 214 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g1883 Vvi-Chr18 25830848 25832659 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g1883 18 569 Receptor kinase-like Gene Family AT5G55830 38.322 4.06e-120 369
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Vvi18g1883 Pkinase 4.1e-51 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1883 - - vvi:100267107 1223.76