LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vvi18g1880	ATGTTTCTGGAAGTCCGATTCCAAATTTGTCTGGCCAGGCCTTGTATGCCATTCAAGCTGTGGAGTGAAAGCAAAGGCACAGCATCCTTCAATACGACCTTTGTGCTCAGAATCACTTCGAGGACAGATCCAGGTGGTGAAGGCTTGGCCTTTATCTTAACTGGACGTGCCACTCGTCCAGAGAACAGTGAAGGGAAATGGCTTGGGATTGTGAATGCAAGCACAAATGGATCAGCTCAAAACCAGATAGTGGCAGTAGAATTTGACACACGGAAAAGCTACATGGAGGACCTGAACAACAACCACATTGGCGTGAACGTGAACAGCGTCTACTCAATCAAACAAGCGAACCTAAGCATCAATCTTTCAAGTGGCACCGATATAACAGTGAAGGTTCAATATGATGGGAAAAATTTGAGTGCCTTTGTTGGAACGCAGATGAAGGCTCCAGCAATCGCTCTTCCTATTAACCTCTCAGACCATCTGCCACAGAAAGTTTTTGTGGGATTCTCGGCTTCAACAGGGAATTACACTCAACTGAACTGTGTAAGGTCATGGGAATTCAGTGGTTCGAGTGTAGATGAAGATCCTGACCTGTTATGGGTCTGGATCATGGTTCCAGTAACAGTTTTGGTTAGTGGGGTTGCCTTCTATTTCTCTTGGAAATGGAAATGTGGAAAGCAGGAGGAAGAGGAGGATGATCCGAGGGTAGAACAACAGATTCAAGGCTCATCCACAGCTCCAAGGAAATTTCGACTGAAAGAACTTAAAGCTGCTGCGGAAAATTTCAACTCCAAGAATGAGCTTGGCAAAGGTGGATTTGGGACAGTCTACAAAGGATTCTTGAAGAATAAGGAGGTAGCTGTGAAAAGATTTTCAAGGAATTCACATCAAAGCAACCAAGATTTTATAGCAGAAGTCACAACAATCAGCAATCTACATCACAAAAATCTTGTCAAATTAGTTGGATGGTGCTATGAAAAAAGGGAACTCCTAATAATATATGAGTTCATGCCAAATACGAGCCTAGACAAGCTCATATTCTGCAAAAAATCCGATGTGGAGAATCCAATCACACTGAATTGGGAAACAAGATATGGAATCATTTGCGGGGTGGCTCAGGCATTGGACTATCTTCACAATGGATGCGAGAAGAGGGTGCTTCACCGAGACATAAAAGCGAGCAATATAATGTTGGATTCAGATTTCAACGCCCGGTTGGGGGATTTTGGATTGGCTAGAACTATTCAACTGAGTGATCAAACTCACCACTCAACAAAAGAGATTGCAGGGACACCTCGGTATATGGCTCCAGAAAGTTTTCATACTGGTAGGGCTGCCGTTGAAACCGATGTATATGCCTTCGGTGTTCTTGTACTGGAAGTTGTCTGTGGAAGAAAGCCTGGAGATCAAAGCGTGAACAACAAATACAACGGGATAGTGGATTGGGTATGGGAATACTATAGGAGACAAAGGATTCTGGATGTCGTAGATTTGCGACTGAACGGGGTTTCCCACAAGGAGCAGACTGAATACGCACTGATGTTGGCATTGTCCTGTTGTCATCCCAATCCGTACCAGAGGCCGTCCATGAGAATTGCTTTAAGGGTTCTCACAGGAGAGGTAGACCCACCAGTTATCCCCATTGAAAAACCTCCTTTTGTGTGGCCAGCCACACCTCCGGTCTCTTTCAGGGAGGATTTGGAGTATCCTCCCACAGGAGGCCTGCTCTCTCCACCTTCAGAACTAATTGGGAGATAA	1761	0.4486	MFLEVRFQICLARPCMPFKLWSESKGTASFNTTFVLRITSRTDPGGEGLAFILTGRATRPENSEGKWLGIVNASTNGSAQNQIVAVEFDTRKSYMEDLNNNHIGVNVNSVYSIKQANLSINLSSGTDITVKVQYDGKNLSAFVGTQMKAPAIALPINLSDHLPQKVFVGFSASTGNYTQLNCVRSWEFSGSSVDEDPDLLWVWIMVPVTVLVSGVAFYFSWKWKCGKQEEEEDDPRVEQQIQGSSTAPRKFRLKELKAAAENFNSKNELGKGGFGTVYKGFLKNKEVAVKRFSRNSHQSNQDFIAEVTTISNLHHKNLVKLVGWCYEKRELLIIYEFMPNTSLDKLIFCKKSDVENPITLNWETRYGIICGVAQALDYLHNGCEKRVLHRDIKASNIMLDSDFNARLGDFGLARTIQLSDQTHHSTKEIAGTPRYMAPESFHTGRAAVETDVYAFGVLVLEVVCGRKPGDQSVNNKYNGIVDWVWEYYRRQRILDVVDLRLNGVSHKEQTEYALMLALSCCHPNPYQRPSMRIALRVLTGEVDPPVIPIEKPPFVWPATPPVSFREDLEYPPTGGLLSPPSELIGR*	587

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vvi18g1880	586	FunFam	Probable L-type lectin-domain containing receptor kinase S.5	7	197	-	-
	Vvi18g1880	586	Gene3D	-	14	194	-	-
	Vvi18g1880	586	ProSiteProfiles	Protein kinase domain profile.	263	547	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vvi18g1880	586	Pfam	Legume lectin domain	17	195	IPR001220	GO:0030246
	Vvi18g1880	586	ProSitePatterns	Legume lectins beta-chain signature.	84	90	IPR019825	-
	Vvi18g1880	586	SUPERFAMILY	Concanavalin A-like lectins/glucanases	11	189	IPR013320	-
	Vvi18g1880	586	SUPERFAMILY	Protein kinase-like (PK-like)	246	572	IPR011009	-
	Vvi18g1880	586	SMART	serkin_6	263	538	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vvi18g1880	586	CDD	lectin_legume_LecRK_Arcelin_ConA	17	191	IPR001220	GO:0030246
	Vvi18g1880	586	Pfam	Protein kinase domain	264	535	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vvi18g1880	586	Gene3D	Transferase(Phosphotransferase) domain 1	338	543	-	-
	Vvi18g1880	586	Gene3D	Phosphorylase Kinase; domain 1	248	337	-	-
	Vvi18g1880	586	FunFam	probable L-type lectin-domain containing receptor kinase S.5	338	544	-	-
	Vvi18g1880	586	CDD	STKc_IRAK	269	540	-	-
	Vvi18g1880	586	PANTHER	-	17	545	-	-
	Vvi18g1880	586	ProSitePatterns	Protein kinases ATP-binding region signature.	269	290	IPR017441	GO:0005524
	Vvi18g1880	586	FunFam	Probable L-type lectin-domain containing receptor kinase S.5	248	337	-	-
	Vvi18g1880	586	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	387	399	IPR008271	GO:0004672\|GO:0006468

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vvi18g1880	Vvi-Chr18	25805856	25807616	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vvi18g1880	17	552	Receptor kinase-like Gene Family	AT5G55830	37.838	5.40e-114	353

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_L-LEC	Vvi18g1880		Pkinase	1.4e-50	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vvi18g1880	-		-	vvi:104882780	1135.94