LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vvi18g1879	ATGTTTTTTCGAGGAAGTGGAAAGAAAAGGAAAAAGGGAGCGGGACAACGCCGGTCCTCACTCTTGGGGAGCAAAATTTTCCAACTTCTATTAGAAGTCTTATTCAAAACAAGGAAAAGTCTTGATATTTTCTTCAATGATTCTACTGAGAATGATTTCCTCTTAACGGATTCACAGATAACTCAGGATGCCATCCAAGTTACATATGATGTTTCTGGAAATCCTATTACAAATTTGTCTGGCCAGGCCCTGTATAAAAGGCCATTCAAGCTGTGGAGTGAAAGCAAAGGCACAGCATCCTTCAATACGACCTTTGTGCTCAGAATCACTCCGAGGACAGATCCAGGTGGTGAAGGCTTGGTCTTTATCTTAACTGGACGTGCCACTCGTCCAGAGAACAGTGAAGGGAAATGGCTTGGGATTGTGAATGCAAGCACAAATGGATCAGCTCAAAACCAGATAGTGGCAGTAGAATTTGACACAAGGAAAAGCTACATGGAGGACCTGAGCAACAACCACATTGGCGTGAACGTGAACAGCGTCTACTCAATCAAACAAGCGAACCTAAGCATCAATCTTTCAAGTGGCACCGATATAACAGTGAAGATTCAATATGATGGGAAAAATTTGAGTGCCTTTGTTGGAACGCAGATGAAGGCTCCAGCAATCGCTCTTCCTATTAACCTCTCAGACCATCTGCCACAGAATGTTTTTGTGGGATTCTCGGCTTCAACAGGGAATCACACTCAACTGAACTGTGTAAGGTCATGGGAATTCAGTGGTTCGAGTGTAGATGAAGATCCTGACCTGTTATGGGTCTGGATCATGGTTCCAGTAACAGTTTTGGTTAGTGGGGTGGCCTTCTATTTCTCTTGGAAATGGAAATGTGGAAAGCAGGAGGAAGAGGAGGATGATCCGAGGGTAGAACAACAGATTCAAGGCTCATCCACAGCTCCAAGGAAATTTCGACTGAAAGAACTTAAAGCTGCTACGGAAAATTTCAACTCCAAGAATGAGCTTGGCAAAGGTGGATTTGGGACAGTCTACAAAGGATTCTTGAAGAATAAGGAGGTAGCTGTGAAAAGATTTTCAATGAATTCACATCAAAGCAACCAAGATTTTATAGCAGAAGTCACAACAATCAGCAATCTACATCACAAAAATCTTGTCAAATTAGTTGGATGGTGCTATGAAAAAAGGGAACTCCTAATAATATATGAGTTCATGCCAAATACGAGCCTAGACAAGCTCATATTCTGCAAAAAATCCGATGTGGAGAATCCAATCACACTGAATTGGGAAACAAGATATGGAATCATTTGCGGGGTGGCTCAGGCATTGGACTATCTTCACAATGGATGCGAGAAGAGGGTGCTTCACCGAGACATAAAAGCGAGCAATATAATGTTGGATTCAGATTTCAACGCCCGATTGGGGGATTTTGGATTGGCTAGAATTATTCAACTGAATGATCAAACTCACCACTCAACAAAAGAGATTGCAGGGACACCTGGGTATATGGCTCCAGAAAGTTTTCATACCGGTAGGGCTGCCGTTGAAACTGATGTATATGCCTTCGGTGTTCTTGTACTGGAAGTTGTCTGTGGAAGAAAGCCTGGAGATCAAAGCGTGAACAACAAATACAACAACGGGATAGTGGATTGGGTATGGGAATACTATAGGAGACAAAGGATTCTGGATGTCGTAGATTTGCGACTGAATGGGGTTTTCCACAAGGAGCAGACTGAATATGCACTGATGTTGGCATTGTCTTGTTGTCATCCCAACCCGTACCAGAGGCCATCCATGAGAATTGCTTTAAGGGTTCTCACAGGAGAGGTAGACCCACCAGTTATCCCCATTGAAAAACCTCCTTTTGTGTGGCCAGCCACACCTCCGGTCTCTTTCAGGGAGGATTTGGAGTATCCTCCCACAGAAGGCCTGCTCTCTCCACCTTCAGAACTCATTGGGAGATAA	1977	0.436	MFFRGSGKKRKKGAGQRRSSLLGSKIFQLLLEVLFKTRKSLDIFFNDSTENDFLLTDSQITQDAIQVTYDVSGNPITNLSGQALYKRPFKLWSESKGTASFNTTFVLRITPRTDPGGEGLVFILTGRATRPENSEGKWLGIVNASTNGSAQNQIVAVEFDTRKSYMEDLSNNHIGVNVNSVYSIKQANLSINLSSGTDITVKIQYDGKNLSAFVGTQMKAPAIALPINLSDHLPQNVFVGFSASTGNHTQLNCVRSWEFSGSSVDEDPDLLWVWIMVPVTVLVSGVAFYFSWKWKCGKQEEEEDDPRVEQQIQGSSTAPRKFRLKELKAATENFNSKNELGKGGFGTVYKGFLKNKEVAVKRFSMNSHQSNQDFIAEVTTISNLHHKNLVKLVGWCYEKRELLIIYEFMPNTSLDKLIFCKKSDVENPITLNWETRYGIICGVAQALDYLHNGCEKRVLHRDIKASNIMLDSDFNARLGDFGLARIIQLNDQTHHSTKEIAGTPGYMAPESFHTGRAAVETDVYAFGVLVLEVVCGRKPGDQSVNNKYNNGIVDWVWEYYRRQRILDVVDLRLNGVFHKEQTEYALMLALSCCHPNPYQRPSMRIALRVLTGEVDPPVIPIEKPPFVWPATPPVSFREDLEYPPTEGLLSPPSELIGR*	659

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vvi18g1879	658	ProSitePatterns	Legume lectins beta-chain signature.	155	161	IPR019825	-
	Vvi18g1879	658	Gene3D	-	43	269	-	-
	Vvi18g1879	658	SMART	serkin_6	334	610	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vvi18g1879	658	FunFam	Probable L-type lectin-domain containing receptor kinase S.5	319	408	-	-
	Vvi18g1879	658	SUPERFAMILY	Protein kinase-like (PK-like)	317	645	IPR011009	-
	Vvi18g1879	658	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	458	470	IPR008271	GO:0004672\|GO:0006468
	Vvi18g1879	658	CDD	STKc_IRAK	340	612	-	-
	Vvi18g1879	658	CDD	lectin_legume_LecRK_Arcelin_ConA	44	262	IPR001220	GO:0030246
	Vvi18g1879	658	ProSitePatterns	Protein kinases ATP-binding region signature.	340	361	IPR017441	GO:0005524
	Vvi18g1879	658	PANTHER	-	69	617	-	-
	Vvi18g1879	658	ProSiteProfiles	Protein kinase domain profile.	334	619	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vvi18g1879	658	Gene3D	Phosphorylase Kinase; domain 1	319	408	-	-
	Vvi18g1879	658	Pfam	Protein kinase domain	335	607	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vvi18g1879	658	FunFam	probable L-type lectin-domain containing receptor kinase S.5	409	616	-	-
	Vvi18g1879	658	Pfam	Legume lectin domain	48	266	IPR001220	GO:0030246
	Vvi18g1879	658	FunFam	Probable L-type lectin-domain containing receptor kinase S.5	41	268	-	-
	Vvi18g1879	658	SUPERFAMILY	Concanavalin A-like lectins/glucanases	44	261	IPR013320	-
	Vvi18g1879	658	Gene3D	Transferase(Phosphotransferase) domain 1	409	615	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vvi18g1879	Vvi-Chr18	25797007	25799964	Proximal

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vvi18g1879	34	624	Receptor kinase-like Gene Family	AT5G55830	36.940	1.57e-121	375

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_L-LEC	Vvi18g1879		Pkinase	3.8e-50	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vvi18g1879	-		-	vvi:104882780	1257.28