LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vvi18g1877	ATGCGTTCAGAGATAGCTGTGAATGCCATCCAAGTTACACATGATGTTTCTGGAAGTCCTATTACAAATTTGTCTGGCCAGGCCCTGTATAAAAGGCCATTCAAGCTGTGGAGTGAAAGCAAAGGCACAGCATCCTTCAATACGACCTTTGTGTTCAGAATCACTCCGAGGACAGATCCAGGTGGTGAAGGCTTGGCCTTTATCTTAACTGGGCATGCCACTCGTCCAGAGAACAGTGAAGGGAAATGGCTTGGGATTGTGAATGCAAGCACAAATGGATCAGCTCAAAACCAGATAGTGGCAGTAGAATTTGACACCAGGAAAAGCTACATGGAGGACTTGAGCAACAACCACATTGGCGTGAACGTGAACAGCGTCTACTCAATCAAACAAGCGAATCTAAGCATCAATCTTTCAAGTGGCACCGATATAACAGTGAAGGTTCAATATGATGGGAAAATTTTGAGTGCCTTTGTTGGAACGCAGATGAAGGCTCCAGCAATCGCTCTTCCTATTAACCTCCCAGAACATCTGCCACAGAAAGTTTTTGTGGGATTCTCGGCTTCAACGGGGAATCACACTCAACTGAACTGTGTAAGCTCATGGGAATTCAGTGGTTTGAGTGTAGATGAAGATCCTGACTTGTTATGGGTCTGGATCATGGTTCCAGTAACAGTTTTGGTTAGTGGGGTTGCCTTCTATTTCTCTTGGAAATGCAAATGTGCAAAGCAGGAGGAAGAGGAGGATGATCCGTGGGTAGAACAACAGATTCAAGGCTCATCCACAGCTCCAAGGAAATTTCGACTGAAAGAACTTAAAACTGCTACAGAAAATTTCAACTCCAAGAATGAGCTTGGCAAAGGTGGATTTGGGAGAGTCTACAAAGGATTCTTGAAGAATAAGGAGGTAGCTGTGAAAAGATTTTCAAGGAATTCCCATCAAAGCAAGCAAGATTTTATAGCAGAAGTCACAACAATCAGCAATCTACATCACAAAAATCTTGTCAAATTAGTTGGATGGTGCTATGAAAAAAGGGAACTCCTTCTAATATATGAGTTCATGCCAAATACGAGCCTAGACAAGCTCATATTCTATAAAAAATCCGACGAGGAGAATCCAATCACACTGAATTGGGAAACAAGATATGGAATCATTTGCGGGGTGGCTCAGGCATTGGACTATCTTCACAATGGATGCGAGAAGAGGGTGCTTCACCGAGACATAAAAGCGAGCAATATAATGTTGGATTCAGATTTCAATGCCCGGTTGGGAGATTTTGGACTGGCTAGAATTATTCAACAGAGTGATTACACTCACCACTCAACAAAAGAGATTGCAGGGACACCTGGGTATATGGCTCCAGAAAGTTTTCATACTGGTAGGGCTGCCGTTGAAACCGATGTATATGCCTTCGGTGTTCTTGTACTGGAAGTTGTCTGTGGAAGAAAGCCTGGAGATCAAAGCGTGAACAACAAATACAACAACGGGATAGTGGATTGGGTATGGGAATACTATAGGAGACAAAGGATTCTGGATGTCGTAGATTTGCGACTGAATGGGGTTTTCCGCAAGGAGCAGACTGAATATGCACTGATGTTGGCATTGTCCTGTTGTCATCCCAACCCATACCAGAGGCCATCCATGAGAATTTCTTTAAGGGTTCTTACAGGAGAGGTGGACCCACCAGTTATCCCCATTGAAAAACCTCCTTTTGTGTGGCCGGCCACACCTCCGGTCTCTTTCAGGGAGGATTTGGAATATCCTCCCACAGGAGGCCTGCTCTCTCCACCTTCAGAACTCATTGGGAGATAA	1812	0.4426	MRSEIAVNAIQVTHDVSGSPITNLSGQALYKRPFKLWSESKGTASFNTTFVFRITPRTDPGGEGLAFILTGHATRPENSEGKWLGIVNASTNGSAQNQIVAVEFDTRKSYMEDLSNNHIGVNVNSVYSIKQANLSINLSSGTDITVKVQYDGKILSAFVGTQMKAPAIALPINLPEHLPQKVFVGFSASTGNHTQLNCVSSWEFSGLSVDEDPDLLWVWIMVPVTVLVSGVAFYFSWKCKCAKQEEEEDDPWVEQQIQGSSTAPRKFRLKELKTATENFNSKNELGKGGFGRVYKGFLKNKEVAVKRFSRNSHQSKQDFIAEVTTISNLHHKNLVKLVGWCYEKRELLLIYEFMPNTSLDKLIFYKKSDEENPITLNWETRYGIICGVAQALDYLHNGCEKRVLHRDIKASNIMLDSDFNARLGDFGLARIIQQSDYTHHSTKEIAGTPGYMAPESFHTGRAAVETDVYAFGVLVLEVVCGRKPGDQSVNNKYNNGIVDWVWEYYRRQRILDVVDLRLNGVFRKEQTEYALMLALSCCHPNPYQRPSMRISLRVLTGEVDPPVIPIEKPPFVWPATPPVSFREDLEYPPTGGLLSPPSELIGR*	604

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vvi18g1877	603	PANTHER	-	23	562	-	-
	Vvi18g1877	603	Pfam	Legume lectin domain	8	206	IPR001220	GO:0030246
	Vvi18g1877	603	SUPERFAMILY	Concanavalin A-like lectins/glucanases	8	205	IPR013320	-
	Vvi18g1877	603	Gene3D	Transferase(Phosphotransferase) domain 1	354	560	-	-
	Vvi18g1877	603	SUPERFAMILY	Protein kinase-like (PK-like)	262	589	IPR011009	-
	Vvi18g1877	603	CDD	STKc_IRAK	285	557	-	-
	Vvi18g1877	603	Gene3D	-	2	212	-	-
	Vvi18g1877	603	ProSitePatterns	Protein kinases ATP-binding region signature.	285	306	IPR017441	GO:0005524
	Vvi18g1877	603	ProSitePatterns	Legume lectins beta-chain signature.	100	106	IPR019825	-
	Vvi18g1877	603	SMART	serkin_6	279	555	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vvi18g1877	603	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	403	415	IPR008271	GO:0004672\|GO:0006468
	Vvi18g1877	603	Pfam	Protein kinase domain	280	549	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vvi18g1877	603	ProSiteProfiles	Protein kinase domain profile.	279	564	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vvi18g1877	603	CDD	lectin_legume_LecRK_Arcelin_ConA	8	205	IPR001220	GO:0030246
	Vvi18g1877	603	FunFam	Probable L-type lectin-domain containing receptor kinase S.5	1	213	-	-
	Vvi18g1877	603	FunFam	Probable L-type lectin-domain containing receptor kinase S.5	264	353	-	-
	Vvi18g1877	603	Gene3D	Phosphorylase Kinase; domain 1	264	353	-	-
	Vvi18g1877	603	FunFam	probable L-type lectin-domain containing receptor kinase S.5	354	561	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vvi18g1877	Vvi-Chr18	25769243	25771054	Proximal

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vvi18g1877	18	569	Receptor kinase-like Gene Family	AT5G55830	39.044	2.76e-123	377

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_L-LEC	Vvi18g1877		Pkinase	1.5e-50	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vvi18g1877	-		-	vvi:100263697	1232.24