Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1871 ATGCGCTTGTTGAGCAAAACCAGCAAGAAGCGGGATATTGTGTATCCACTGCTGCATGATTTGTGCGATGACTATGGCCGTTGTGGTGATAACAGAATTTGTAGAATTAACGATAGGCTTATTTGTGAGTGCTTGGAAGGGTTTGTTCCAAAATCACAGGAGGAATGGGAATTTCAAAATTGGACCAGTGGCTGCATTAAGAGGACACATTTAGACTGCCAAAAGGGAGAAGGATTTATGGAACTTGAAGGTGTCAAACTACCTGACTTGTTGGAATTCTGGTTGATGAATGGTTCCAGTGAAATCAAGAAACGCTTGGTGGTTGTGGTGGTCTCATCTACTGCTTCTGGAGTTTTCATGTTGAGCTTGGTACTCTGGTTTATGGTTCGGAAGAGAAAGAAAAGAAGTTCAGAAACAGAAAATGAAGACCTGGAGCAGCAGTTGTTTGATCTGGCTACTACTTCAAGTGCTACTAATAACTTCTCTGATTCAAATTTGATTGGGAATGGTGGTTTTGAACCAATTTACAAGGGTACCCTAGCGACAGGACAAGAAATTGCAGTAAAAAGGCTTTCAAACAATTCAGGACAAGGCTTTCAAGAGTTCAAGAATGAAGTTATTTTGATTGTCAAACTTCAACATCACAATTTTGTGAGGCTTTTGGGTTATTGCGTGGAAGAAGAAAGAATGCTCATCTATCAGTATATGCCCAACAAAAGCTTGGACTGTTTTATTTTTGGTCTGAAACTCTTAGCCCAAAAAAGGGGAACGACATAA 777 0.4015 MRLLSKTSKKRDIVYPLLHDLCDDYGRCGDNRICRINDRLICECLEGFVPKSQEEWEFQNWTSGCIKRTHLDCQKGEGFMELEGVKLPDLLEFWLMNGSSEIKKRLVVVVVSSTASGVFMLSLVLWFMVRKRKKRSSETENEDLEQQLFDLATTSSATNNFSDSNLIGNGGFEPIYKGTLATGQEIAVKRLSNNSGQGFQEFKNEVILIVKLQHHNFVRLLGYCVEEERMLIYQYMPNKSLDCFIFGLKLLAQKRGTT* 259
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1871 258 Pfam S-locus glycoprotein domain 16 52 IPR000858 GO:0048544
Vvi18g1871 258 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 12 96 - -
Vvi18g1871 258 Pfam Protein tyrosine and serine/threonine kinase 165 245 IPR001245 GO:0004672|GO:0006468
Vvi18g1871 258 Gene3D Phosphorylase Kinase; domain 1 124 235 - -
Vvi18g1871 258 SUPERFAMILY Protein kinase-like (PK-like) 147 248 IPR011009 -
Vvi18g1871 258 ProSiteProfiles Protein kinase domain profile. 161 258 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi18g1871 258 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 127 235 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g1871 Vvi-Chr18 25602787 25604114 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g1871 97 246 Receptor kinase-like Gene Family AT4G23190 44.872 8.70e-38 137
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vvi18g1871 PK_Tyr_Ser-Thr 4.9e-11 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1871 - - vvi:104882784 486.108