Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1862 ATGCCAAGCATTTCAATTTTTGAGTTCATTCCAATCAGCTTGTTTAGTTTCCAAAGTGAGGTTCCTCTTTCCAGCTATCCTGATGTGGATTTTCACATCAACAAAATAATGGCTGCAACAAAAATGTGGTTCTCAAAGAACAATGAAAATTACACCTTTCTTCCATTAGGGGGGGAAAGCATTTCTGTGTGGCTTCTTGTTGCAACTCTTTCTGACTCTGACACTCAGCATGACAATCAAATGAATGATTGCCAAACAAATCCAGTTGGATGGTGGAGACCAGCTCTCCTGGTGAAAAATATGGTCATCCTGGGAAGTGCATTAGATCCAAGGGCAGCTGCTATTGGTGCTTCAGCTAGTCATGGGATCATTGGTACACATGATGGACTTGTGTACATGTGGGAATTGTCTACCGGTACTAAGCTTGGCAGTTTACACTATTTCAAAGGTATTAATGAAGAAACTTTTATCCCTGAAGCAAAATTCAAATTTGTTGACATTGAAGAGTTGGGTCCTTATGTCAATGGGAAGGAGCTTGTAGATGTTAGTGGAGTTGTTCAAAGTGTCTCTCCTACAATGAGCATACGAAGGAAGAGTAACAATGAGATTGTTCCTAAGCGTGATATTACTATTGCGGACAAGACGAAGAAGAGTGTTGTGGTCTCTTTGTGGAATGATCATGCTACTAATGTAGGGTAG 699 0.4049 MPSISIFEFIPISLFSFQSEVPLSSYPDVDFHINKIMAATKMWFSKNNENYTFLPLGGESISVWLLVATLSDSDTQHDNQMNDCQTNPVGWWRPALLVKNMVILGSALDPRAAAIGASASHGIIGTHDGLVYMWELSTGTKLGSLHYFKGINEETFIPEAKFKFVDIEELGPYVNGKELVDVSGVVQSVSPTMSIRRKSNNEIVPKRDITIADKTKKSVVVSLWNDHATNVG* 233
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1862 232 PANTHER TRANSFORMING GROWTH FACTOR BETA REGULATED GENE 1 2 153 IPR040092 -
Vvi18g1862 232 Pfam Replication protein A OB domain 175 230 IPR031657 -
Vvi18g1862 232 SUPERFAMILY Nucleic acid-binding proteins 162 231 IPR012340 -
Vvi18g1862 232 Gene3D - 157 232 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g1862 Vvi-Chr18 25457608 25460537 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g1862 152 232 Core DNA Replication Machinery Family AT5G08020 74.074 1.10e-34 128
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1862 - - vvi:104880625 285.034