Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1854 ATGAATGATTGCCAAACAAATCCAGTTGGATGGTGGAGACCAGCTCTCCTGGTGAAAAATATGGTCATCCTGGGAAGTGCATTAGATCCAAGGGCAGCTGCTATTGGTGCTTCAGCTAGTCATGGGATCATTGGTACACATGAAGGACTTGTGTACATGTGGGAATTGTCTACCGGTACTAAGCTTGGCAGTTTACACTATTTCAAAGAGGTTGAGGAGGCCAGTAATGAAGAAACTTTTATCCCTGAAGCAAAATTCAAATTTGTTGACATTGAAGAGTTGGGTCCTTATGTCAATGGGAAGGAGCTTGTAGATGTTAGTGGAGTTGTTCAAAGTGTCTCTCCTACAATGAGCATACGAAGGAAGAGTAACAATGAGATTGTTCCTAAGCGTGATATTACTATTGCGGACAAGACGAAGAAGAGTGTTGTGGTCTCTTTGTGGAATGATCATGCTACTAATGTAGGGTAG 471 0.4225 MNDCQTNPVGWWRPALLVKNMVILGSALDPRAAAIGASASHGIIGTHEGLVYMWELSTGTKLGSLHYFKEVEEASNEETFIPEAKFKFVDIEELGPYVNGKELVDVSGVVQSVSPTMSIRRKSNNEIVPKRDITIADKTKKSVVVSLWNDHATNVG* 157
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1854 156 Gene3D - 81 156 IPR012340 -
Vvi18g1854 156 SUPERFAMILY Nucleic acid-binding proteins 86 155 IPR012340 -
Vvi18g1854 156 Pfam Replication protein A OB domain 99 154 IPR031657 -
Vvi18g1854 156 PANTHER TRANSFORMING GROWTH FACTOR BETA REGULATED GENE 1 2 141 IPR040092 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g1854 Vvi-Chr18 25358676 25361329 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g1854 64 156 Core DNA Replication Machinery Family AT5G08020 72.043 6.47e-40 139
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1854 K07466 - vvi:104882754 173.711