Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Vvi18g1842 | ATGGCTGATGGTCATGAAACAGATAAGAACATTGAGATATGGAAGATCAAGAAGTTGATCAAAGCATTGGAAGCTGCTAGAGGCAATGGTACCAGCATGATTTCTCTTATCATGCCTCCTCGTGATCAAATATCAAGGGTTACCAAGATGCTTGGAGATGAGTTTGGAACTGCTTCAAACATTAAAAGTAGGGTCAATCGTCAATCTGTTTTAGGTGCAATCACATCTGCGCAGCAGAGATTGAAGCTGTACAACAAGGTTCCTCCTAATGGTCTTGTGCTGTATACTGGCACGATTGTGACTGAAGATGGAAAGGAAAAGAAGGTGACAATTGACTTTGAGCCTTTCAGGCCTATAAATGCCTCTCTTTACCTATGTGACAACAAGTTCCATACGGAAGCTCTGAACGAACTTTTAGAATCTGACGACAAGTTTGGTTTTATTGTCATGGATGGAAATGGTACCCTCTTTGGCACATTAAGTGGGAACACCAGGGAGGTGCTTCACAAATTTACTGTTGACCTTCCAAAAAAGCATGGAAGAGGTGGCCAGTCGGCTCTTCGATTTGCTCGTCTTCGAATGGAGAAGCGGCACAACTATGTGAGGAAAACTGCAGAGCTTGCCACCCAGTTTTTTATCAATCCTGCCACCAGCCAGCCCAATGTTTCAGGGTTGATACTTGCTGGTTCCGCTGACTTCAAAACTGAGCTGAGTCAGTCTGACATGTTTGATCCCCGTCTTCAGGCCAAAATACTGAATGTGGTTGATGTTTCTTATGGAGGTGAAAATGGTTTCAATCAGGCAATAGAGTTGTCATCTGAGATCCTATCCAATGTGAAGTTCATTCAGGAGAAGCGCTTGATAGGGAAATATTTTGAGGAGATCAGCCAGGATACTGGGAAGTATGTCTTTGGCGTTGATGACACACTGAAAGCTTTGGAGATGGGTGCTGTTGAGACCCTGATTGTGTGGGAAAATCTTGACATTAGTAGGTATGTTCTGAAAAACAATATTACGGGTGAGATAGTCATAAAACACTTGAACAAGGAACAAGAGAGCAATCAGAGCCACTTCAGGGATACGGCTACTTCTGCTGAATTGGAGGTTCAGGAAAAGATGTCACTGCTAGAGTGGTTTGCTAATGAGTACAAGCGCTTTGGTTGTACACTTGAGTTTGTGACCAACAAATCACAAGAGGGATCGCAGTTCTGCAGAGGATTTGGTGGTATAGGTGGAATTCTTCGTTACCAGCTGGATATGAGGTCCTTTGATGAGGTTTCTGATGATGGAGAGAATTATGATGATTCAGATTAG | 1314 | 0.4315 | MADGHETDKNIEIWKIKKLIKALEAARGNGTSMISLIMPPRDQISRVTKMLGDEFGTASNIKSRVNRQSVLGAITSAQQRLKLYNKVPPNGLVLYTGTIVTEDGKEKKVTIDFEPFRPINASLYLCDNKFHTEALNELLESDDKFGFIVMDGNGTLFGTLSGNTREVLHKFTVDLPKKHGRGGQSALRFARLRMEKRHNYVRKTAELATQFFINPATSQPNVSGLILAGSADFKTELSQSDMFDPRLQAKILNVVDVSYGGENGFNQAIELSSEILSNVKFIQEKRLIGKYFEEISQDTGKYVFGVDDTLKALEMGAVETLIVWENLDISRYVLKNNITGEIVIKHLNKEQESNQSHFRDTATSAELEVQEKMSLLEWFANEYKRFGCTLEFVTNKSQEGSQFCRGFGGIGGILRYQLDMRSFDEVSDDGENYDDSD* | 438 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Vvi18g1842 | 437 | Gene3D | eRF1 domain 1 | 2 | 135 | IPR024049 | - | |
| Vvi18g1842 | 437 | SUPERFAMILY | Translational machinery components | 142 | 276 | - | - | |
| Vvi18g1842 | 437 | Gene3D | eRF1 domain 2 | 136 | 277 | IPR042226 | - | |
| Vvi18g1842 | 437 | FunFam | Eukaryotic peptide chain release factor subunit 1 | 136 | 277 | - | - | |
| Vvi18g1842 | 437 | FunFam | Peptide chain release factor subunit 1 | 279 | 437 | - | - | |
| Vvi18g1842 | 437 | SUPERFAMILY | N-terminal domain of eukaryotic peptide chain release factor subunit 1, ERF1 | 6 | 140 | IPR024049 | - | |
| Vvi18g1842 | 437 | Gene3D | - | 279 | 437 | IPR029064 | - | |
| Vvi18g1842 | 437 | Pfam | eRF1 domain 1 | 18 | 138 | IPR005140 | - | |
| Vvi18g1842 | 437 | PANTHER | PEPTIDE CHAIN RELEASE FACTOR SUBUNIT 1 | 5 | 429 | IPR004403 | GO:0003747|GO:0006415 | |
| Vvi18g1842 | 437 | Pfam | eRF1 domain 2 | 144 | 277 | IPR005141 | - | |
| Vvi18g1842 | 437 | FunFam | Eukaryotic peptide chain release factor subunit 1 | 2 | 135 | - | - | |
| Vvi18g1842 | 437 | NCBIfam | peptide chain release factor aRF-1 | 12 | 417 | IPR004403 | GO:0003747|GO:0006415 | |
| Vvi18g1842 | 437 | Pfam | eRF1 domain 3 | 281 | 418 | IPR005142 | - | |
| Vvi18g1842 | 437 | SUPERFAMILY | L30e-like | 278 | 420 | IPR029064 | - | |
| Vvi18g1842 | 437 | SMART | eRF1_1_2 | 4 | 140 | IPR005140 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Vvi18g1842 | Vvi-Chr18 | 25257086 | 25258399 | Dispersed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Vvi18g1842 | 1 | 437 | Eukaryotic Initiation Factors Gene Family | AT3G26618 | 91.533 | 0.0 | 827 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Vvi18g1842 | K03265 | - | vvi:100242471 | 852.818 |