Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1839 ATGGAGGACCTCCCACCGGGCTTTCGCTTCTACCCAACTGAAGAAGAACTCGTCTCCTTCTACCTCCGCATGAAGCTCCAGGGCAAGAGGCTGCAGGAGCTCAACCGGGTCATCCCCGATGTCAACATTTATGAGCTGGAGCCGTGGCATCTTCCAAGGCTTTCAGGGGAGGTGTGCAGAAGGGACACTGAGCAATGGTTCTTCTTTATCCCGCGACAAGCGAGGGAGGTCCAGGGAGGGAGGCCCAGTAGGACTACTGGGTCAGGGTACTGGAAGGCCACGGGCTCTCCAAGCTACGTCTACTCTTCCGATAATCGGGTGATTGGAGTGAAGAAGACCATGGTTTTCTACAACGGCAAAGCTCCTGCTGGCAGAAAAACTAAGTGGAAGATGCAAGAGTACAGAGCCATTGAAGCAGATGCTACCCCAAAGTTGAGGCATGAGTTCAGTCTGTCCCGAGTTTATGTGATATCCGGGAGCTTCAGAGCATTTGATCGACGGCCCCTTGGCACAGTGACGAGAGAAGAAACCAGCCAACAAGTTCGACGACAACATGCCGCCGCCGCCGCTGCTGCTGCTGCTGCAGTGTCATCTGATCATGTTCAGGATACTCAAATGATGGAGAAAAGAAGCTCATCACCTGAATGTTCATATTCAGGAGGATATGACCATGTTCATCTCCAAGCCTCCTCCGCACCTATCGACGATTTTCTATGGGATTGGGGACAACTGGATTGGCTGTAA 744 0.5255 MEDLPPGFRFYPTEEELVSFYLRMKLQGKRLQELNRVIPDVNIYELEPWHLPRLSGEVCRRDTEQWFFFIPRQAREVQGGRPSRTTGSGYWKATGSPSYVYSSDNRVIGVKKTMVFYNGKAPAGRKTKWKMQEYRAIEADATPKLRHEFSLSRVYVISGSFRAFDRRPLGTVTREETSQQVRRQHAAAAAAAAAAVSSDHVQDTQMMEKRSSSPECSYSGGYDHVHLQASSAPIDDFLWDWGQLDWL* 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1839 247 Pfam No apical meristem (NAM) protein 5 135 IPR003441 GO:0003677|GO:0006355
Vvi18g1839 247 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 3 199 - -
Vvi18g1839 247 Gene3D NAC domain 13 160 IPR036093 GO:0003677|GO:0006355
Vvi18g1839 247 SUPERFAMILY NAC domain 3 155 IPR036093 GO:0003677|GO:0006355
Vvi18g1839 247 ProSiteProfiles NAC domain profile. 4 157 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g1839 Vvi-Chr18 25246446 25247384 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g1839 2 246 NAC Transcription Factor Family AT5G22380 52.381 7.02e-88 258
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vvi18g1839 NAM 2.6e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1839 - - vvi:100263202 500.745