Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1838 ATGCAACCGACACGTGGCGGTGAAGTCAATAGACTCGCCCGTTTCCGCTCAGCTCCGGCAACGTGGTTGGACACACTTCTCGAAGAAGAAGAAGGAGAAGAAGAGGACGACGATTCGTTGAAGCCGACCCAGTCACTGACTCAGCTGCTCGCTGGCTCCGGCGGTCCCGCCGGTGGGTCCGGAGGTTACATTCCTGCCTCGGATCCGAGCATGTTCGACGGCGCCGGTGCGCAAGGGTTTCTCCGGCAGAGCAGCTTGCCGACGGAGTTCCTCTCCCAGATCAATTCGTCGGAGGGCTATTTTTCGAGCTTTGGGATTCCAGCAGGGTTCGACTACGCGGCGTCGCCGGCAGTGGATGGCTCTCCGACAGGGAAGCGGGCGAGGGAGTTGGAATCGCGAAGTTCGTCTAGGAAATTTTCATCTCAGTCGAAAGGGGAGCAGAGTTCTCGATTAACCGGTAGCGTGGCAAGCTTACTGGATGTGGACATGGAAAAGCTTTTAGAGGATTCAGTACCCTGCAGGGTTCGGGCCAAGCGGGGTTGTGCTACACATCCTCGCAGCATTGCAGAAAGAGTTCGGAGGACCCGAATCAGTGACAGAATAAGGAAACTTCAGGAACTTGTGCCCAATATGGATAAGCAAACAAACACTGCAGATATGCTAGAAGAGGCAGTAGAGTATGTCAAGTTTCTACAACAAAAAATTCAGATTTCGTATTTCCATTTCTTTCTGTCTCTGATCCAAAAGAAATTAAATTGA 759 0.5257 MQPTRGGEVNRLARFRSAPATWLDTLLEEEEGEEEDDDSLKPTQSLTQLLAGSGGPAGGSGGYIPASDPSMFDGAGAQGFLRQSSLPTEFLSQINSSEGYFSSFGIPAGFDYAASPAVDGSPTGKRARELESRSSSRKFSSQSKGEQSSRLTGSVASLLDVDMEKLLEDSVPCRVRAKRGCATHPRSIAERVRRTRISDRIRKLQELVPNMDKQTNTADMLEEAVEYVKFLQQKIQISYFHFFLSLIQKKLN* 253
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1838 252 MobiDBLite consensus disorder prediction 116 151 - -
Vvi18g1838 252 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 184 238 IPR036638 GO:0046983
Vvi18g1838 252 MobiDBLite consensus disorder prediction 136 151 - -
Vvi18g1838 252 Gene3D - 182 239 IPR036638 GO:0046983
Vvi18g1838 252 CDD bHLH_AtbHLH_like 186 237 IPR045239 -
Vvi18g1838 252 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 181 231 IPR011598 GO:0046983
Vvi18g1838 252 SMART finulus 187 237 IPR011598 GO:0046983
Vvi18g1838 252 MobiDBLite consensus disorder prediction 29 69 - -
Vvi18g1838 252 Pfam Helix-loop-helix DNA-binding domain 186 232 IPR011598 GO:0046983
Vvi18g1838 252 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 67 237 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g1838 Vvi-Chr18 25210946 25216275 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g1838 14 236 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G09180 60.268 5.37e-70 214
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vvi18g1838 HLH 9.4e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1838 - - vri:117907588 448.743